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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGCAATATTGCCTTTGAGATTTGTGGATTTCTTACGGTTCTTGCTTACACTGTTGTGCTACATTCTACTAGAGAACCTGATCAAACTGTATCAGCAgttagagatctttgatcagtttggcagaacatgggagcaagtatattttttccaaattattctcatcttttctgttgattaccgcag

Basic information

species Zea mays
transcript GRMZM2G037229_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037229_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g65310.1 (Oryza sativa), 5'ss of exon 8
AGCAAGCAATATTGCCTTTGAGATTTGTGGATTTCTTACGGTTCTTGCTTACACTGTTGTGCTACATTCTACTAGAGAACCTGATCAAACTGTATCAGCAgttagagatctttgatcagtttggcagaacatgggag-caagtatatt-ttttccaaattatt--ctcatcttttctgttgattaccgcag
 |||||||| ||||| |  |||||||| |||||||| || |||||||||   ||| |||||||||| |||||||||||||||||||||||| | || |||| ||||  || |||   |||| || | |  ||  | | ||   ||||  | ||| ||| || |  ||  |  | |||||  || || ||||
-GCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtaga--tcattgtgaagttgggtacagtattagtgtcacaaatatcgtcttcgaaagtactaactgtttctatctgtgcatcactgcag