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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCACTTGCCCTCAGTGGTATGCCTGACGCACAGTCAAAACCTGTGCTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagctgcaatattatgatatttttaatatattttatttatacaatgctatcgggagtgactcttgtttgttttatag

Basic information

species Zea mays
transcript GRMZM2G037200_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g45480.4 (Oryza sativa), 5'ss of exon 6
GGTGCACTTGCCCTCAGTGGTATGCCTGACGCACAGTCAAAACCTGTGCTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagctgcaatattatgatatttttaatatattttatttatacaatgctatcgggagtgactcttgtttgttttatag
|| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||| ||| ||   |  || |||  ||||      ||||| || |    |  |||| | |||| ||| | || | ||| |||
GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagttgtcttgctaagattattttg-----ttttacttctgatgt-ttatctgaagtggctccttttgggtttgtag

upper sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g45480.3 (Oryza sativa), 5'ss of exon 4
--GGTGCACTTGCCCTCAGTGGTATGCCTGACGCACAGTCAAAACCTGTGCTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagctgcaatattatgatatttttaatatattttatttatacaatgctatcgggagtgactcttgtttgttttatag
  || ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||| ||| ||   |  || |||  ||||      ||||| || |    |  |||| | |||| ||| | || | ||| |||
AGGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagttgtcttgctaagattattttg-----ttttacttctgatgt-ttatctgaagtggctccttttgggtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345951|gb|DN212924.1|DN212924
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|6020641|gb|AW065674.1|AW065674
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|60347714|gb|DN214687.1|DN214687
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|71429256|gb|DR810306.1|DR810306
EST:     CTTCTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|29576813|gb|CB616925.1|CB616925
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|149070981|gb|EE159386.2|EE159386
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|149086360|gb|EE175901.2|EE175901
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|50334152|gb|CO529278.1|CO529278
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|149095549|gb|EE181206.2|EE181206
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|211495269|gb|FL457209.1|FL457209
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|60344000|gb|DN210973.1|DN210973
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|88751062|gb|DY535203.1|DY535203
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|31997695|gb|CD661718.1|CD661718
EST:     CTACTGTGTTCATTAAATGACAACNCTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|5847063|gb|AW000142.1|AW000142
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|78074602|gb|DV503036.1|DV503036
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
EST: gi|71297927|gb|DR784933.1|DR784933
EST:     CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATC                         GTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA
genomic: CTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagc ... tgttttatagGTTCAGTGACAGAGGCAGATTATTCTCCAAAAAAGAAATTAGGGCAATACA