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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTTCTCCTGTGTTCGACAAGCTCGAATCCGAACTGGCAAAAGCTATGCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggttttggccttgtgtcgtttattttttgcacaagatgtagatgtttcaggggttcggaatcgcaaggtgctgatatatatagctttatttgctttgtgcgcag

Basic information

species Zea mays
transcript GRMZM2G036861_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 5'ss of exon 9
CTCGGTTCTCCTGTGTTCGACAAGCTCGAATCCGAACTGGCAAAAGCTATGCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtg-cggttttggccttgtgtcgtttattttttgcacaagatgtagatgtttcaggggttcggaatcgcaaggtgctgatatatatagctttatttgctttgtgcgcag
 | || |||||||| || ||||| || ||  | ||| |||| ||||||||||||||| ||||||| ||||| ||||| ||||| ||||| ||||| || |||    |  ||   ||        ||| ||  |  |     || | ||   |   |  | |  | |     | | |||   |  |||        |   |||||| |||
ATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTGCAGgtaattgaattaatctgcacataattagttgatttattttttgcaaatagct-gtgcatgccaactactttgctactggcctcaatactaactaataacttgtgcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148951093|gb|EC896758.2|EC896758
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|78109643|gb|DV528059.1|DV528059
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|211012763|gb|FL448392.1|FL448392
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|76281789|gb|DV021357.1|DV021357
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|148940355|gb|EC885142.2|EC885142
EST:     GAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|76934910|gb|DV174082.1|DV174082
EST:     ATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: ATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|149098824|gb|EE184837.2|EE184837
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: gi|78109644|gb|DV528060.1|DV528060
EST:     GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG                         GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGG