Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttagattggattcaaatgtattgcttgagtcataaaatcttttggatcaacttaatttagcaccgtacaacttagatttcttgttgcctttcttc...

Basic information

species Zea mays
transcript GRMZM2G035338_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g40880.1 (Oryza sativa), 5'ss of exon 8
GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttag-attg--gattca-aatgtattgctt----gagtcataaaatcttttggatcaacttaatttagcaccgtacaacttagatttcttgt-tgcctttcttc
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||| |||||  ||||  ||| || ||| ||||   |       |   | |||  ||    || | ||   |||   |  |  || | | || |   |  |||        
GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGTGATCCAGTTGAAAATGACATATTTGTAAAGCCGCAgtgagttatcattgcagatccagaatatattctctttgtagattgcagaatgcttgaactctagttt-cttatttcgatttaaatcaaatgtgaagcatgc--------

upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA19G34390.1 (Glycine max), 5'ss of exon 8
GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttagattggattcaa-atgtattgcttgagtcataaaatcttttggatc-aacttaatttagcac-cgtac-aacttagatttcttgttgcctttcttc
|| ||||||||||  ||||||||||| ||||||||||| |||||||||||  |||| || ||||| || |  |||| |||    |   ||| || ||||  | |     |||  |  |  ||    ||  ||  || |||  |    ||   |   | | |   || ||   |     
GGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAgtgagtatcttaacatttaagatgtggtccactcatcagcattttattaatttctgacacaaattatgatatatattgaacaaaagtaaatgatgaaata----

upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT1G03030.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttag-attggattc--aaatgtattg--cttgagtcataaaatcttttggatcaacttaatttagca---ccgtaca-acttagatttcttgttgcctttcttc--
|| ||||||||||  ||||||||||||||||| ||||| || ||||||||  |||| || ||||| |  |  ||||||||    | | | |||  |||| | |       || || ||   |  | || |     ||  |||  |    ||| | | | | || |  ||| |  ||| |  |   
GGCTCAGTTTATGTGCCATCATTTGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAgtaagtagtcagtagcttcctaaatctgtcaaatccgaatc-tagtgtaatatgaaatggttttgtttgcctattccggagacagtcagctaacttatgtcctcttcttag

upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0141g00310.t01 (Vitis vinifera), 5'ss of exon 8
GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttagattggattcaaatgtattgcttgagtcataaaatcttttggatcaacttaatttagcaccgtacaacttagatttcttgttgcctttcttc---
|| ||||||||||| ||||| ||||||||||||||||| || ||||||||  |||| |||||| | |  |  ||||||||   |||   |||      || | |    | || ||    |   |    | || ||   | || |      |  ||    || |    |   |     
GGGTCAGTTTATGCACCATCGTTTGATCATGGTGTTGGAGATCCAGTTGAAGATGATATATTTATCAGCCTCCAgtaagt--aatttacttctttcacatagataatcttatcaacagctgccg-ctgatttcataatgaactgggtgtttatgaacatttatccagtccatatgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37389954|gb|CF632202.1|CF632202
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|60350250|gb|DN217223.1|DN217223
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|78179609|gb|DV549982.1|DV549982
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|166510545|gb|EG255544.1|EG255544
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTA
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTA
EST: gi|88751321|gb|DY535462.1|DY535462
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|6952677|gb|AW424745.1|AW424745
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|211532388|gb|FL468965.1|FL468965
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|89249957|gb|DY621743.1|DY621743
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|24765829|gb|CA400988.1|CA400988
EST:     AGTTGAGAATGACATATTTGTAAAGCCACA                         GCCCAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: AGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|149082265|gb|EE171450.2|EE171450
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|94472538|gb|EB701496.1|EB701496
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|71766668|gb|DR964605.1|DR964605
EST:     GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
EST: gi|86470370|gb|DY236740.1|DY236740
EST:     GATCATGGTGTGGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACA                         GCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT
genomic: GATCATGGTGTTGGCGACCCAGTTGAGAATGACATATTTGTAAAGCCACAgtaagttaga ... actttggcagGCACAAAATAGTGATAGTTGAAGGGAACTATCTGTTACTGGAAGAAGATGT