1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttttttgctcttgatctttttgtttttgtgttaatgtacatctgacactatgtatttggtaaaggtaccaattaaatcctccagtttcacaag...
species | Zea mays |
transcript | GRMZM2G035150_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|78092883|gb|DV521257.1|DV521257
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|4804174|gb|AI666040.1|AI666040
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|76289426|gb|DV028994.1|DV028994
genomic: GTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|71427953|gb|DR809003.1|DR809003
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|166563741|gb|EG244809.1|EG244809
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCEST: gi|86466720|gb|DY233090.1|DY233090
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCC
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|71427180|gb|DR808230.1|DR808230
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|50324081|gb|CO519207.1|CO519207
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|50331811|gb|CO526937.1|CO526937
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|78080763|gb|DV509175.1|DV509175
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTEST: gi|50327716|gb|CO522842.1|CO522842
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttttttgctcttgatctttttgtttttgtgttaatgtacatctgacactatgtatttggtaaaggtaccaattaaatcctccagtttcacaag
AGTGGA
- GTGGAG
- TGGAGA
- - GGAGAA
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - CTGCAG