1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTCTAACCATCCACAACAAGCTAAACAAGTTATAATATGTAACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTGGTCAGgtacattgcggttcgatgtggttctttttgtgcctataatttcctgttttgattgaaacatgtatataacatgctcatcgttgctgttgcccatcttagc...
species | Zea mays |
transcript | GRMZM2G034430_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATAATCCAAAGAGAGGGGACATCAAACTTGGTCAG GTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAATGATEST: gi|32921415|gb|CF026227.1|CF026227
genomic: ATAATCCAAAGAGAGGGGACATCAAACTTGGTCAGgtacattgcg ... ggtcctacagGTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAATGAT
EST: ACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTAGTCAG GTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAATGATEST: gi|148999931|gb|EE036988.2|EE036988
genomic: ACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTGGTCAGgtacattgcg ... ggtcctacagGTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAATGAT
EST: ACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTGGTCAG GTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAAATGA
genomic: ACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTGGTCAGgtacattgcg ... ggtcctacagGTCAGGACACTTCTGGATAAAGCTAACGCTCTATCTAAGATGTGGAA-TGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTAACCATCCACAACAAGCTAAACAAGTTATAATATGTAACATTCACGTTCTTTATAATCCAAAGAGAGGGGACATCAAACTTGGTCAGgtacattgcggttcgatgtggttctttttgtgcctataatttcctgttttgattgaaacatgtatataacatgctcatcgttgctgttgcccatcttagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG