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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacagtagaacctttcagctgtctatcttttctgttcgttacatatatctttcatgaatatgttttcaactcgtgcag

Basic information

species Zea mays
transcript GRMZM2G034083_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 8
TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaac---agtagaaccttt-cagctgtctatcttttctgttcgttacatatatctttcatgaatatgt--tttcaactcgtgcag
||| |||||||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||  |   ||  |||||||| | |||| |  | |     | || |||  | |    |     || |||   ||| ||    || ||
TGGAGATTTGGGATATGCGTCAGAGCTTGGAAATTATGCAGAATACAGCGGCGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTGGTTTTGGATgtaagggctccagaggaaccttttcggctgacagttt-----gatcattatgtttccgctctgacaaaatgatatttgaatctttgtag

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 9
TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacagtagaacctttcagctgtctatct--tttctgttcgttacatatatct--ttcatgaatatgttttcaactcgtgcag-------------------
||| |||||||| ||||| || ||||| || || ||||||||||| ||||||||||| || ||||| |||||  |||| ||||| |||||  || | |||||||||| | ||  | ||||    |  || |     ||| | || ||    | || |  | | | ||    ||||||  |  ||  |                   
TGGAGATTTGGGTTATGCGTCAGAGCTTGGTAACTATGCAGAGTATAGTGGAGCTCCGAATGAGGAAGAGGTGTTGCAATATGCCAGAGTTGTTCTTGATgtaagaa-attatgaactttggcataccttttgggcttcagctctttgttaaaatttgctgcttaaaataattttcatttgttgtggaacaatatactctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16916519|gb|BM072879.1|BM072879
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67023264|gb|CO452013.1|CO452013
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|40303556|gb|CK347943.1|CK347943
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|31357444|gb|CD441801.1|CD441801
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67013475|gb|CO442224.1|CO442224
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|211020101|gb|FL063974.1|FL063974
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|60353272|gb|DN220245.1|DN220245
EST:     GAGCTCCCAAGGAGGAGGAGGTTTTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32866830|gb|CF006512.1|CF006512
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|16927003|gb|BM080076.1|BM080076
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|18177201|gb|BM378411.1|BM378411
EST:     AGTATGATAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: AGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|18964714|gb|BM661164.1|BM661164
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|60353107|gb|DN220080.1|DN220080
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGACGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|18964715|gb|BM661165.1|BM661165
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|24769705|gb|CA404834.1|CA404834
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32844872|gb|CD984553.1|CD984553
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|22490798|gb|BU050721.1|BU050721
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67025367|gb|CO454116.1|CO454116
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|5819356|gb|AI987562.1|AI987562
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|148947868|gb|EC893361.2|EC893361
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTTTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32845129|gb|CD984810.1|CD984810
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32844736|gb|CD984417.1|CD984417
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|211020103|gb|FL063976.1|FL063976
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|211020091|gb|FL063964.1|FL063964
EST:     AGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: AGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|7238111|gb|AW573333.1|AW573333
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|44901489|gb|CK828034.1|CK828034
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32844415|gb|CD984096.1|CD984096
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|149008522|gb|EE040695.2|EE040695
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|18177582|gb|BM378792.1|BM378792
EST:     AGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: AGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|19058295|gb|BM736962.1|BM736962
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|24768435|gb|CA403564.1|CA403564
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|78103680|gb|DV522108.1|DV522108
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|31353311|gb|CD437668.1|CD437668
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|13150060|gb|BG320382.1|BG320382
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATTGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|87156899|gb|DY401688.1|DY401688
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|37400570|gb|CF637640.1|CF637640
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|33103007|gb|CF062967.1|CF062967
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32844999|gb|CD984680.1|CD984680
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32919518|gb|CF024330.1|CF024330
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|31354936|gb|CD439293.1|CD439293
EST:     GAGCTCCCAAGGAGGTTGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32866831|gb|CF006513.1|CF006513
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|148951644|gb|EC897388.2|EC897388
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|33100657|gb|CF060617.1|CF060617
EST:     TGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: TGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|37387167|gb|CF630776.1|CF630776
EST:     GTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|60339101|gb|DN206074.1|DN206074
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|19057819|gb|BM736486.1|BM736486
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|84980549|gb|DW530898.1|DW530898
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|87151765|gb|DY396554.1|DY396554
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67042517|gb|CO468772.1|CO468772
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67022701|gb|CO451450.1|CO451450
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|149000524|gb|EE037707.2|EE037707
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|60350340|gb|DN217313.1|DN217313
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGACGTAAGAGAGCCCTTTTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|32936205|gb|CF041017.1|CF041017
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|44681881|gb|CK786929.1|CK786929
EST:     TTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTACGAGAGCCCTTCTAATCGGAGGA
genomic: TTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|14245199|gb|BG873781.1|BG873781
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|6827666|gb|AW331309.1|AW331309
EST:     CAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: CAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|89763369|gb|DY690597.1|DY690597
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|13381606|gb|BG458386.1|BG458386
EST:     TTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: TTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|37401585|gb|CF638160.1|CF638160
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGTCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|211219075|gb|FL476018.1|FL476018
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
EST: gi|67016541|gb|CO445290.1|CO445290
EST:     GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGAT                         TGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA
genomic: GAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 216

TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 488

TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 463

TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 642

TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacag ... actcgtgcagTGCGCTACCTCTGATCCTGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGATTTGGGATATGCTTCGGAGCTAGGAAATTATGCAGAGTACAGTGGAGCTCCCAAGGAGGAGGAGGTTCTGCAGTATGCTAGAGTGCTTTTGGATgtaagaacagtagaacctttcagctgtctatcttttctgttcgttacatatatctttcatgaatatgttttcaactcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG