1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATTGATGCCTTGTTGGAGAAGACCATTAAGCACATGGTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacatacttattaattttgccatttaatttgcagcctttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacag
species | Zea mays |
transcript | GRMZM2G031656_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCGEST: gi|40335493|gb|CK369563.1|CK369563
genomic: AAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
EST: GACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCGEST: gi|109637277|gb|EC590822.1|EC590822
genomic: GACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
EST: AAGGTGTGACTAACCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGNGGTGCG
genomic: AA-GTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGATGCCTTGTTGGAGAAGACCATTAAGCACATGGTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacatacttattaattttgccatttaatttgcagcctttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacag
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