Sequence
atgc intronic sequence ATGC exonic sequenceACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 8
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttct--agcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttc--cttgaacag-------
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ACTGCACACCCTGAATGTGCTACATTAGACACATCAATTCTCGATGCTCTGCATATTATGCGCGATGGCAAATTCTTGCATATTCCTGTTGTTGATGGAGgtaacacttgactcttcttcagcctaaggtttctctttatggtactagtattttatatctgactgaactttttaattttaaaaatgaacag
upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagccta-aggttgcctgct------ttgatgcttccattgtgtatctgattttccttttccttgaacag----
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ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag
upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA04G38480.1 (Glycine max), 5'ss of exon 8
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtat-ctgattttccttttccttgaacag---
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ACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGGACAGAGgttagctttgct--ttcttacctaa--ttgcctgcctatgtactttacatatttatgctgaatatatttgttttgcacttgcag
upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacag
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ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatg--------aaatatttaacatcatct---gttgggcag
upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S86_26V6.1 (Physcomitrella patens), 5'ss of exon 8
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttga------ttcttcta-gcctaaggttgcctgctttgatgcttccattgtgtat--ctgattttccttttc---cttgaacag--------
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ACACCCAATCCTGAGTGTGCTGGTTTTGATACCACCCTTGTGGATGCGCTTCATATCATGCATGATGGCAAATTCCTCCATCTTCCAGTTACAGATCATGgtagacattgggctccccttttctgcattcgaaagtgcaaattgcgggtgaaaagttgtgcatgattagtttgtctttccgaatttccatgacatctttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76290187|gb|DV029755.1|DV029755EST: ACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAG ATGGGCAGGTTGCTGCTTGCTTGGACGTTCTGCAACTTACCCATGCTGCCA
genomic: ACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttg ... ccttgaacagATGGGCAGGTTGCTGCTTGCTTGGACGTTCTGCAACTTACCCATGCTGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA