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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttacggatgttttccagctcatttagatgtgaagagattttttcggttgagttgagggggcgggtcacaacagcagaacagctttaacaggatt...

Basic information

species Zea mays
transcript GRMZM2G030902_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 8
GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttacggatgttttccagctcatttagatgtgaagagattttttcggttgagttgagggggcgggtcacaacagc--agaacagctttaacaggatt---
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| || | ||  |  ||||  |||||||    | | | | |  |||   ||   |   ||||  |  | |    |||  |||  ||  || |      |   
GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgcagaaatcctcca--tcatttat---tcaggcgttcattttaatttgttgttggggaagaataattttagcatagatgagtcttcatttatataaa

upper sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttacgg-atgttttccagctcatttagatgtgaagagattttttcggttgagttgagggggcgggtcacaacagcag-aacagctttaacaggatt
|| ||||| ||||| |||||||||||||||||||||||||| |||   |||||||||     ||    |  ||||||    ||  |   | | || |  |||    | |  |  | |     |   ||    |  |    ||| | | |     || 
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaatat-tttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936779|gb|EC880917.2|EC880917
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
EST: gi|22545757|gb|BU098131.1|BU098131
EST:     TGGTTCAAAGGGGCATCGGGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|71769697|gb|DR967634.1|DR967634
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
EST: gi|149096474|gb|EE182216.2|EE182216
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|149000018|gb|EE037116.2|EE037116
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTGGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|71304925|gb|DR788593.1|DR788593
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGGCACA-CA
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGG-CACAACA
EST: gi|211138007|gb|FL213712.1|FL213712
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGATTCACATGAGCTTGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|149080743|gb|EE169805.2|EE169805
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATG
EST: gi|21432115|gb|BQ547605.1|BQ547605
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|60350487|gb|DN217460.1|DN217460
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATC
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATC
EST: gi|32847027|gb|CD986708.1|CD986708
EST:     TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
genomic: TGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
EST: gi|26558086|gb|CA830321.1|CA830321
EST:     GGTTCAAAGGGGCATCGTGGAATTGGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG
genomic: GGTTCAAAGGGGCATCGTGGAATT-GGGTTTATCACGTTTCAGAGTGCAGgtacgcttac ... aattaaatagAGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAG