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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag

Basic information

species Zea mays
transcript GRMZM2G030784_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag
| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || ||||||||||| ||        | |  |   |  || | | | ||   |  |  | |  ||  |      |  | |  ||| | |  |||| |      ||| | |  ||  | || |||   ||||  ||   || |||||||  |  |||
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttctt-------atattgataagcacacaaagtgttcattcatgaacttctgcac------gttccataattgttacctatgct------ctagataaaata-tcttgtttaaacaaccatctggtttgtattattgtatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71325325|gb|DR799341.1|DR799341
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|213178228|gb|FM191284.1|FM191284
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTNNNNNN
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211324554|gb|FL104645.1|FL104645
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAA
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAA
EST: gi|67021074|gb|CO449823.1|CO449823
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGNAGG-ATTGGCTAAAGACCAATGCCAGCCCCTGAG-
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTG-AGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGG
EST: gi|61236882|gb|DN586594.1|DN586594
EST:     TTGGGCTATTGGAACTGGTAAAGTTGNNNNNNNNAGCTCAGGCTCAGGAA                         GTGCACGCCCTCCCTGA
genomic: TTGGGCTATTGGAACTGGTAAAGTTGCCACCCC-AGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCC-TCCCTGA
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGANGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTTGAG-T
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCT-GAGGT
EST: gi|84980759|gb|DW531108.1|DW531108
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211324557|gb|FL104648.1|FL104648
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|78109161|gb|DV527578.1|DV527578
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|38502545|gb|CF972405.1|CF972405
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGAT-GGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCATGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|21331670|gb|BQ487051.1|BQ487051
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAAGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAACGTCAGCCCTGAG
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAG
EST: gi|211528308|gb|FL091444.1|FL091444
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGATGGATTGGCTAAAGACCAATGCCAGCCCTGAAGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|5439487|gb|AI820408.1|AI820408
EST:     TTTGGGCTATTGGAACTGGTAAAGNTGCCACCCCAGCTCAGGCTCAGGAA                         G-GCACGCCTCC
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCC
EST: gi|211405979|gb|FL414494.1|FL414494
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCNTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCC-TGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
EST: gi|18384965|gb|BM418164.1|BM418164
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|60338733|gb|DN205706.1|DN205706
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAAGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAACGTCAACCCTGAAGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|83278900|gb|DV942908.1|DV942908
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|8551638|gb|BE128809.1|BE128809
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAAGCTCAGGAA                         GTGCACGCCTCCCTGAG
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAG
EST: gi|67017841|gb|CO446590.1|CO446590
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGNAGG-ATTGGCTAAAGACCAATGCCAGCCCCTGAG-
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTG-AGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGG
EST: gi|31350868|gb|CD435225.1|CD435225
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67020170|gb|CO448919.1|CO448919
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCCTGAGGT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGGT
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGNAG-T
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTG-AGGT
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18384001|gb|BM417201.1|BM417201
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|29544188|gb|CB604568.1|CB604568
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71332087|gb|DR802949.1|DR802949
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCANGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|101389975|gb|EB816919.1|EB816919
EST:     TTGGGCTATTGGAACTGGTAAAGTTGCCACCCCACCTCAAGCTCAAGGAA                         GTGCACCCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
genomic: TTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCA-GGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
EST: gi|93283118|gb|EB675382.1|EB675382
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA