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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcag

Basic information

species Zea mays
transcript GRMZM2G030784_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 7
GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcag
| || ||||||| |||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| |||||||||| ||| ||| |   || || || ||     |||       |  ||  |      | |  ||  |||   ||   ||  ||  |  ||||    |                           
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacg--aacacagtagaacgattgtacagacatgatt--acccgcctgattcactgaat--accgtctccctttctttgttctgtag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166517329|gb|EG077365.1|EG077365
EST:     GTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: GTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|71325325|gb|DR799341.1|DR799341
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCC
EST: gi|13558792|gb|BG550147.1|BG550147
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGAAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|71433476|gb|DR814526.1|DR814526
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18162386|gb|BM332225.1|BM332225
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     CAGCACAGTCTGATGTCGATGGGTTTCTGGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATTCA-CGCGGCCACCCGTGAAGTCCG
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCAT-CAACGCGGCCACC-GTGAAGTCCG
EST: gi|67010285|gb|CO439034.1|CO439034
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|76294301|gb|DV033869.1|DV033869
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|17931550|gb|BM268510.1|BM268510
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATC
EST: gi|19351223|gb|BM895755.1|BM895755
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|32935763|gb|CF040575.1|CF040575
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|60338268|gb|DN205241.1|DN205241
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|93013557|gb|EB639077.1|EB639077
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|74235418|gb|DT643332.1|DT643332
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G                         CCTGAGTTCATCGACATCATCAACGCGGGCACCCGTGAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACC-GTGAA
EST: gi|14242641|gb|BG840345.2|BG840345
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|40337088|gb|CK371158.1|CK371158
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31353766|gb|CD438123.1|CD438123
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|28576056|gb|CB281948.1|CB281948
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     AGCACAGCCTGATGTCGATGGTTTTNCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: AGCACAGCCTGATGTCGATGGTTTT-CTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|14243110|gb|BG840832.2|BG840832
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18172029|gb|BM347417.1|BM347417
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAAAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18169056|gb|BM338896.1|BM338896
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|17931629|gb|BM268589.1|BM268589
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     AGCACAGCCTGATGTCAATGGTTTTCTTGTCCGG-GGAGCTTCTTTGAAG                         CCTGAGTTCATCTACTTCATCACCGCGGCCCCCGTGAA-TCCGCTTAAAGA
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTC-GGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA-GA
EST: gi|113703957|gb|EE681461.1|EE681461
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G                         CCTGAGTT-ATCGACA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACA
EST: gi|67023036|gb|CO451785.1|CO451785
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCTACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|50325683|gb|CO520809.1|CO520809
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCCGGCCACCGTGAAGTCC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGC-GGCCACCGTGAAGTCC
EST: gi|67021275|gb|CO450024.1|CO450024
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31353828|gb|CD438185.1|CD438185
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18166360|gb|BM336199.1|BM336199
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGGTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA-GAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18165956|gb|BM335795.1|BM335795
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGACCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTTCTT-GAAG                         CCTGAGTTCATCGACATCATCAACGCGGNCACCGTGAAGTCCGCTTTAGA
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTT-CTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGA
EST: gi|60347447|gb|DN214420.1|DN214420
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31351126|gb|CD435483.1|CD435483
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGGCACCGTGAAGTCTGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67011680|gb|CO440429.1|CO440429
EST:     AGCACAGCCTGATGTCGATGGTTTTCTTTGTCGG-GGAGCTTCTTTGAAG                         CCTGA-TTCATCG-CATCATCAACGCGGC-ACCGTGAAGTC-GTTTA-GAT
genomic: AGCACAGCCTGATGTCGATGGTTTTCTT-GTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCCCCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|211191318|gb|FL465408.1|FL465408
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18166630|gb|BM336469.1|BM336469
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18164729|gb|BM334568.1|BM334568
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|18163088|gb|BM332927.1|BM332927
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGACACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCC-CCGTGAAGTCC-CTTA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAA
EST: gi|211522297|gb|FL091413.1|FL091413
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|211213987|gb|FL471281.1|FL471281
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|17930054|gb|BM267014.1|BM267014
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67021862|gb|CO450611.1|CO450611
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA-GAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31352108|gb|CD436465.1|CD436465
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|60348349|gb|DN215322.1|DN215322
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: gi|89250828|gb|DY622614.1|DY622614
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 322

GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 778

GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 897

GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 664

GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG