1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccattagcctaagttctgatgcagatttgattggagcaccctcacgtgcaaatggacaatagacatacttaacaaacctccaccgtccgaggtgac...
species | Zea mays |
transcript | GRMZM2G030299_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|76283912|gb|DV023480.1|DV023480
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|149108778|gb|EE189830.2|EE189830
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTTTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|4688403|gb|AI637073.1|AI637073
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|60348350|gb|DN215323.1|DN215323
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|76288116|gb|DV027684.1|DV027684
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|78544199|gb|DV621697.1|DV621697
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|211523349|gb|FL468083.1|FL468083
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTCEST: gi|76283911|gb|DV023479.1|DV023479
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
EST: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG GTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
genomic: TGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccatta ... tctgatacagGTGATGCCGAAACAGCCAGGGTTTGAGAAGAGGAGGGACCTCTATCTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAGgtacccattagcctaagttctgatgcagatttgattggagcaccctcacgtgcaaatggacaatagacatacttaacaaacctccaccgtccgaggtgac
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG