1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgttttgcttctttaccagtggctttctgatctcgatctagctcatggcatatctgaagtgtgaacaaatatttactactccctccaattttt...
species | Zea mays |
transcript | GRMZM2G030072_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTEST: gi|8102628|gb|AW927429.1|AW927429
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGT
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGATEST: gi|33103277|gb|CF063237.1|CF063237
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGAT
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACEST: gi|9255042|gb|BE345510.1|BE345510
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTAC
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGATEST: gi|16926968|gb|BM080036.1|BM080036
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGAT
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAAATEST: gi|9255043|gb|BE345511.1|BE345511
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGAT
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGATEST: gi|60355320|gb|DN222293.1|DN222293
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGAT
EST: ATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGATEST: gi|32929221|gb|CF034033.1|CF034033
genomic: ATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGTACATGGCTGACATGCTCTCCCCAGAT
EST: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG ATCCTTTGGCGCGGTCAGGAGAAGT
genomic: CATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgt ... tgcttgtcagATCCTTTGGCGCGGTCAGGAGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAGgtattattgttttgcttctttaccagtggctttctgatctcgatctagctcatggcatatctgaagtgtgaacaaatatttactactccctccaattttt
- - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG