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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttgttggtttgttgctatgtggtacttgctgtggcatgctttaagcatctatttattttcctttctttcatcaccaatacaagaaaagttaattcttctatacaaatag

Basic information

species Zea mays
transcript GRMZM2G028353_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 8
GGTTGCTAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttgttggtttgt--tgctatgtggtacttgctgtggcatgctttaagcatctatttattttcctttctttcatcaccaatacaagaaaagttaattcttctatacaaatag
|||||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |    | || |||||  || |     |||  |    ||||||  || | | |||   |  ||| |  |||||  || |  |  | ||  ||  | ||   ||||  |  |||||
GGTTGCTAAAGCTCAGAAAGTTCCCGAGGAAGGTTGGACAATGCAAGATGGAACTCCCTGGCCTGGAAACAATGTTCGCGATCACCCTGGAATGATTCAGgtatgttcgggtgatttgtgatggtgcacagtatatatgctggcat-tttgatggatcccctc-tttcctattcttgaattatgatgataaagaagttaaaactttctcaatgaatag

upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G47420.1 (Glycine max), 5'ss of exon 10
GGTTGCTAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttgttggtttgttgctatgtggtacttgctgtggcatgctttaagcatctatttattttcctttctttcatcaccaatacaagaaaagttaattcttctatacaaatag
 ||||||||  |   ||| || || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||| |||||  |   |  | |||      ||  | |||  ||   |   | |  | ||  |||   | | | |   |||  | || ||  | |  | |     || || | | | |       
AGTTGCTAAGTCTAGGAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACACCATGGCCTGGAAATAATGTTCGTGATCACCCAGGAATGATACAGgttgg---taatagttaaaaagtaaatagtatatga-atctaaagtgtaaaatatcatgtgactctatattccattat-actgagatcata-----tatttatacaagat------

upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 8
GGTTGCTAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttgttggtttgttgctatgtggta-cttgctgtgg-----catgctttaagcatctatttattttcctttctttcatcaccaatacaagaaaagttaattcttctatacaaatag
|||||| ||||| || || || || |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||| ||||||||||||||||||    ||  ||     |   |||| | |  | || | ||      | || | |||||||   |||    |  | |||                                           
GGTTGCCAAAGCTCAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACGCCTTGGCCAGGAAATAATGTCCGTGATCACCCTGGAATGATTCAGgtatatatttctgagagttatttatgagatgtcctgatctgatcattcttgttctaagcattcttttgggattttctctag-----------------------------------------

upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 8
GGTTGCTAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttgttggtttgttgctatgtggtacttgctgtggcatgctttaagcatctatttattttcctttctttcatcaccaatacaagaaaagttaattcttctatacaaatag
|||||| || || || || || || |||||||| ||||||||||| ||||| || || |||||||| || ||  | || ||||||||||||||||||||||||  |  | |    ||     ||| | ||  ||| || | |    |  |         |||   |   |||||  ||  | |                                 
GGTTGCCAAGGCACAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACTCCATGGCCTGGGAATAACATCCGAGATCATCCTGGAATGATTCAGgtacacgatttgaaattcagtatatttagtttttgttgagacccattgcagttgggc-cttaacatgtgttcttggatttctatag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211016380|gb|FL362480.1|FL362480
EST:     GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAG                         GTCTTCCTTGGCCAAAGTGGAGGTCTTGACTGTGAGGGAAATGAGCTGCCG
genomic: GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttg ... atacaaatagGTCTTCCTTGGCCAAAGTGGAGGTCTTGACTGTGAGGGAAATGAGCTGCCG
EST: gi|160481592|gb|EY254424.1|EY254424
EST:     GAACCCCAGGGCCAGGAAACAATGTTCGTGATCATCCAGGAATGATTCAT                         GTCTTCCTTGGCCAAAGTGGAGGTGTGGACTGTGAGGGAAATGAGCTGCCG
genomic: GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttg ... atacaaatagGTCTTCCTTGGCCAAAGTGGAGGTCTTGACTGTGAGGGAAATGAGCTGCCG