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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt...

Basic information

species Zea mays
transcript GRMZM2G027282_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 8
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttg--tactagctc--agtatggcctcccccagtat-ttgctccaaaactg--ttgatatcttcccccctaaggtctagt-------------------------------
 || || ||||||||||||||| ||||||| |||||| | |||||||| || |||||||||||||||||||| || |||||| ||||||||||  |||| |||| |  |  |       ||  | |||||  |||| | ||  |  || ||   ||  | ||| || ||  |||| |    | |   |||   |    ||  |||                                 
CGCGGACATTCTTGATCCTGCTTTGATGAGGTCTGGTAGGCTGGACCGAAAAATTGAGTTCCCTCATCCATCCGAAGAAGCACGAGCTAGAATTTTGCAAgtatgtctcctga------aatctgtgttggctacttgttccaaaaattgctgacctgattatctttctttaaaaataaaataaatccttgttctgccagaactaaaacaatctttattttatgtggtcttactctag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 8
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtc-tagt
|||||| |||||||||||||| || ||| | ||||||||  |||| || || ||||||||||| || ||| | || |||||||||||  |||| || |||||       | ||     | |||| |  | | ||  |    | |   |||   ||| | ||          || | || | || | |  |||  || ||| 
TGCTGACATTCTTGATCCTGCCCTTATGCGTTCTGGTCGATTGGATCGAAAAATTGAGTTCCCACACCCAACTGAAGAAGCAAGAGCCCGAATTCTACAGgt-------ttggtatcttcaaattttatttgctgac---attttttctctgacagaactt---------ttgcttatgtttttcacattaatatcatag-

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 8
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt
||| ||||||||||||||||| |||||| | ||||||||| |||| || || |||||||| || || |||   || |||||||||||| |||| || ||||| | |||      |  | ||| | |    | ||  | || | |   |   |  |  |||| ||     |||      |  ||      | ||       
TGCAGATATTCTTGATCCTGCCCTGATGCGTTCTGGTCGTTTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttgttgt-----cttccaaactttacc-tgctgacacattgt--tcaatcaaaacatttact----gactaccctcactttgatattttag-------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 9
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgt-attttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt
 |||||||| || ||||| ||||| ||| | ||||||||| | ||||| || ||||||||||||||||| || || || |||||||| |||||  ||||||| |   ||  | |||        | |||   |  |  |   |            |  | |   |  ||| || ||   || ||  ||  || |       
GGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgtactggcagtagtcctttgtcaga--aattttttgcatttatatttaccactc-ttgtaaatctttttggatgttttcctgtatgcag----

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt
 ||||||||||| || ||||| || ||| ||||||||||  |||| || || |||||||| || |||||  | || |||||||||||| ||||| ||||||||| |       |       ||||| || | |||| ||| ||   | |    || | |||||        | ||||    ||| |     |  | ||| 
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatg-------aatattttcttctagatcattaca-cattgatcactctttgcagagctcttattgactctttcacattgtatttgtag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022292|gb|CO451041.1|CO451041
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|211381567|gb|FL475794.1|FL475794
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|20802484|gb|BQ293534.1|BQ293534
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|211086754|gb|FL006906.1|FL006906
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|22552518|gb|BU102357.1|BU102357
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|32851366|gb|CD991047.1|CD991047
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|37400681|gb|CF637697.1|CF637697
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|5917528|gb|AW054331.1|AW054331
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCCCTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|31357355|gb|CD441712.1|CD441712
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|31356703|gb|CD441060.1|CD441060
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|109637342|gb|EC590887.1|EC590887
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAGGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGGAATGTGAATCCAGATGTCAACTTTGAAGAGTT
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATG-AATGTGAATCCAGATGTCAACTTTGAAGAGTT
EST: gi|78024534|gb|DV492921.1|DV492921
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|20336842|gb|BQ172472.1|BQ172472
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|88758537|gb|DY542906.1|DY542906
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|5456459|gb|AI834149.1|AI834149
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|78543926|gb|DV621424.1|DV621424
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|78544181|gb|DV621679.1|DV621679
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|6827952|gb|AW331595.1|AW331595
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|32851382|gb|CD991063.1|CD991063
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|33097544|gb|CF057504.1|CF057504
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGTAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|211086756|gb|FL006908.1|FL006908
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAG
EST: gi|5124040|gb|AI745881.1|AI745881
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|120480733|gb|EH210980.1|EH210980
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|4885759|gb|AI676879.1|AI676879
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|6563657|gb|AW231384.1|AW231384
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|37401285|gb|CF638005.1|CF638005
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|17970176|gb|BM276941.1|BM276941
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|31355810|gb|CD440167.1|CD440167
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|83278765|gb|DV942773.1|DV942773
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|6564179|gb|AW231801.1|AW231801
EST:     GAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: GAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: gi|20208457|gb|BQ134546.1|BQ134546
EST:     AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG                         ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG