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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCCAAAAAGACTGCTGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagtcttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagcttatctgtcgataaatgtgctgtgcag

Basic information

species Zea mays
transcript GRMZM2G027115_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os10g32730.1 (Oryza sativa), 5'ss of exon 7
ATACCCAAAAAGACTGCTGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagtcttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagcttatctgtcgataaatgtgctgtgcag
 | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||| |||||||||| || || ||||| |  |      |||| ||||          |||| ||| || |  | || | |||||||   || | || |  | |||||
GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctctaactcttgggact------acttctgtt----------agaaaattctgggcatctttaacttatctactgacatatttcttatgcag

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os10g14814.1 (Oryza sativa), 5'ss of exon 6
ATACCCAAAAAGACTGCTGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagtcttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagcttatctgtcgataaatgtgctgtgcag
 | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||  ||||||| ||||||||||||| || ||||| |  |      |||| ||||          |||| ||||   |  | || | ||||||| | || | || |  | |||||
GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAGGCCTGAAAAATGGGGATTGCGGCCATTTAGTGATTgtatgttctaactcttgggact------acttctgtt----------agaaaattacaggcatctttatcttatctattgacatattttatatgcag

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 6
ATACCCAAAAAGACTGC-TGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagt--cttgagcttctctatacttttgttcattgagaagagaac-attatgtgggttttaagctt-atctgtcgataaatgtgctgtgcag
    ||||||     || |   |  | | | || |||||||||||||||||||| |||||| || | |  |||||||||||  |||| |||||| | |||||||    | || |   || || |  || ||  || | |   ||| |         ||| | ||   ||||   || | || |   |  |  |  | |||||
-CTTCCAAAACAGTCGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTCGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtaaaccccaaatactttaagatagtccat-tttgtatgtgttgtgtttctttttattgtatgtcatttatatttgaactattattttaaattat-tgcag

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G06330.1 (Glycine max), 5'ss of exon 1
ATACCCAAAAAGACTGC-TGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagt-cttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagctt-atctgtcgataaatgtgctgtgcag
    ||||||    ||| |   |  | | | || |||||||||||||||||||| |||||| || | | ||||||||||||  |||| |||||| | ||||||||   | || | ||| |   |     |  || | |   ||| |        ||| | ||   ||||   || | ||     |  |  |  | |||||
-CTTCCAAAACAGTTGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTTGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtataccccaaatactttaagatagtcctttttgtatgtgttgtgtttcttttattgtatgtcatttatatttgaactagtattttaaat-ttttgcag