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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCAgtatgtagctttaacatttgattttacactataaatcatcatatgcatatctactgttcgtttcttgtattgttgctgatgtgcaatgctaattttctgctgcag

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 8
TTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCAgtatgtagctttaacatttgattttacactataaatcatcatatgcatatctactgttcgtttcttgtattgttgctgatgtgcaatgctaattttctgctgcag
|| ||||| |||||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||||| | |||||  ||||  |   | | |||  ||   |||  ||  ||    | ||  |    ||||   | |||| | ||||        | | | | | | 
TTCAACTATAGCAGTGGGCAGCCAGCACCAGAGACAATTACCGACCAAATATATGGAAACACACTTTCGgtatgcacctttactatttattagcatattatttata--cattagcccatta--tatttatactatgtagaatagctgttttgcacccaaccctgttttcagta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841182|gb|CD980863.1|CD980863
EST:     AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGGAACACACTATCA                         ATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
genomic: AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCAgtatgtagct ... tctgctgcagATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
EST: gi|9028761|gb|BE238801.1|BE238801
EST:     AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGGAACACACTATCA                         ATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
genomic: AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCAgtatgtagct ... tctgctgcagATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
EST: gi|32839734|gb|CD979415.1|CD979415
EST:     TCAAATTTATGGGAACACACTATCA                         ATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
genomic: TCAAATTTATGGAAACACACTATCAgtatgtagct ... tctgctgcagATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
EST: gi|32943498|gb|CF048317.1|CF048317
EST:     AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGGAACACACTATCA                         ATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT
genomic: AGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCAgtatgtagct ... tctgctgcagATTTCTGAAATAAAAACAGCAGACATTCCTGATACTGATTTGTCCTCTGTT