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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCCAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttatggcttgttgctaagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatag

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 8
AGTTGCCAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagcctta-tggcttgt--tgctaagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaatta---ttttttctgtaaatatag
 ||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |      ||  ||||  || |    ||||  |||  ||||||  || | | |||   |  ||| |  ||||   || |  | || ||  || |||    ||| ||  | ||||   
GGTTGCTAAAGCTCAGAAAGTTCCCGAGGAAGGTTGGACAATGCAAGATGGAACTCCCTGGCCTGGAAACAATGTTCGCGATCACCCTGGAATGATTCAGgtatgttcgggtgatttgtgatggtgcacagtatatatgctggcat-tttgatggatcccctc-tttcctattcttgaattatgatgataaagaagttaaaactttctcaatgaatag--

upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G47420.1 (Glycine max), 5'ss of exon 10
AGTTGCCAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttatggcttgttgctaagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatag
|||||| ||  |   ||| || || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||| |||||  |  | || | |      ||| |||||  |    |   | |  | ||  |||   |   | |   |||  |||| ||  |||  | | | ||||      |          
AGTTGCTAAGTCTAGGAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACACCATGGCCTGGAAATAATGTTCGTGATCACCCAGGAATGATACAGgttgg--taatagttaaaaagtaaatagtatatga-atctaaagtgtaaaatatcatgtgactctatattccattat-actgagatcatatatttatacaagat----------

upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 8
AGTTGCCAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgta---agccttatggcttgttgctaagtagtacttattgtggcatgctt----caagcatctatttgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatag
 ||||||||||| || || || || |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||| ||||||||||||||||||   |    |  |  || ||  | ||  || || ||     ||| |||     ||||||   ||||   |    |||                                          
GGTTGCCAAAGCTCAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACGCCTTGGCCAGGAAATAATGTCCGTGATCACCCTGGAATGATTCAGgtatatatttctgagagttatttatgagatgtcctgatctgatcattcttgttctaagcattcttttgggattttctctag----------------------------------------

upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 8
AGTTGCCAAAGCCCAGAAAGTTCCTGAAGAAGGATGGACAATGCAAGATGGAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagccttatggcttgttgc-taagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatag
 |||||||| || || || || || |||||||| ||||||||||| ||||| || || |||||||| || ||  | || ||||||||||||||||||||||||  |  | ||   |   |  ||  ||||  || ||| | |    | ||         ||    |   ||||   ||  | |                                
GGTTGCCAAGGCACAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACTCCATGGCCTGGGAATAACATCCGAGATCATCCTGGAATGATTCAGgtacacgatttgaaattcagtatatttagtttttgttgagacccattgcagttgggc-cttaacatgtgttcttggatttctatag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308258|gb|FL341177.1|FL341177
EST:     GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAG                         GTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCA
genomic: GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagcctta ... gtaaatatagGTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCA