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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGTTCTGCTATTGCGCAATGGACCAGTTAGTCCTAATTACCTTACAGTCTCATCAAAAGTTCGTGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtactatctaatatctgatatgagctaattttgtatctgtttttcttgctagtgtgtttttgccttgtttgaaccatacagtagcatcttgtaaaaatgcaggcttttaactatgcagcttctttgtccatgttttatgcag

Basic information

species Zea mays
transcript GRMZM2G024690_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024690_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 9
AGGTTGTTCTGCTATTGCGCAATGGACCAGTTAGTCCTAATTACCTTACAGTCTCATCAAAAGTTCGTGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtactatctaatatctgatatgagctaattttgtatctgtttttcttgctagtgtgtttttgccttgtttgaaccatacagtagcatcttgtaaaaatgcaggcttttaactatgcagcttctttgtccatgttttatgcag
|||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| | ||| ||  ||||||||| || | ||| ||||| | ||  |  ||  || |  | |  |||| | || ||||                                                             
AGGTTGTTCTACTATTACGAAATGGACCAGTTAGTCCTAATTACCTTACAATCTCATCAAAAGTCCGTGATTGCTTTGCTTTTCTTCATCGTGGTTCAAGgtaatatttgatagctattatgagctacttctctatatgtttgttttcttgttggcttat--cttactttgcatcacacag-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20300032|gb|BQ162975.1|BQ162975
EST:     G-CTCATCAAAAGTTCGTGATTGCTTTGCTTTTCTTCATCATGGTTCAAG                         GCTTCTTGGGTGGGGGGCTATTGATGAAGGGAGCAAGGAGGAACAAGCCCG
genomic: GTCTCATCAAAAGTTCGTGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtactatcta ... ttttatgcagGCTTCTTGGTTGGTGGTCTATTGATGAAGGGAGCAAGGAGGAACAAGCCCG