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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttccttttgttggaaggaactgtacatcttactagtaccaaatatgaaactgacgaacattcccccttctctgcatgtcgtttgagcag

Basic information

species Zea mays
transcript GRMZM2G023715_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023715_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g21230.1 (Oryza sativa), 5'ss of exon 8
GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttccttttgttggaaggaactgtacatcttacta-gtaccaa---------atatgaaactg-acgaacattcccccttctctgcatgtcgtttgagcag
||| || |||||||||| |||||| || |||||||| |||||||||||| |||||| |||||| |||||||||||||| ||| |        |  | ||  ||||   |||| |||   |         || |   | |  |  ||   | |  || |||||  ||| |||||| |||
GCTTTTTGATGGAAACAAATTCACTGGTAATATCCCAGACTCTCTTGGGCTTGTTACTACACTTGAAGTTGTgtaagtgtccatccacaaacaaaagcttcacatgaaactacgtaaacagtttttgttatgtcggattacataaaacattcatctgctctgtttgttgtttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933999|gb|EC878000.2|EC878000
EST:     ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT                         ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
genomic: ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttcc ... gtttgagcagACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
EST: gi|76291830|gb|DV031398.1|DV031398
EST:     ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT                         ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
genomic: ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttcc ... gtttgagcagACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
EST: gi|148981984|gb|EE028044.2|EE028044
EST:     CCGGGAATATCCCGGACTCTCTTTGGGTT-GTTAGTACACTCGAAGTTGT                         ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCT
genomic: CCGGGAATATCCCGGACTCTCTT-GGGTTTGTTAGTACACTCGAAGTTGTgtaagtttcc ... gtttgagcagACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCT
EST: gi|71768120|gb|DR966057.1|DR966057
EST:     ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT                         ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
genomic: ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttcc ... gtttgagcagACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
EST: gi|148981983|gb|EE028043.2|EE028043
EST:     ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT                         ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA
genomic: ACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGTgtaagtttcc ... gtttgagcagACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAA