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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatctatgactaaaaccatgttaacattaccgtaatagtattattgtaacacatccaaaatcttgctttgcacttacag

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353596|gb|CD437953.1|CD437953
EST:     GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGGTGTTGCTG
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTG
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     CTTCGAAGCAATAAAAAAGCTACTGGAC-TCCCCAAAGNNTTACATTCTG                         T-ATGATGGCGCTCCATGGTGTTGCTGGAGCT
genomic: CTTCGAAGCAATAAAAAAGCTACTG-ACCTCCCCAAAGT-TTACATTCTGgtattcatct ... gcacttacagTTATGATG-CGCTCCATGGTGTTGCTGGAGCT
EST: gi|116816329|gb|EC859054.1|EC859054
EST:     TTCGAAGC-AT-AAAAAGCTA-TGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
genomic: TTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     ACTTCGAA-CAATAAAAAAGCTACTNGACCTCCCCAA-GTTTACATTCTG                         TTATGATGCGCTTCATGGTGTTGCTGGAGCTTATGCCAAA
genomic: ACTTCGAAGCAATAAAAAAGCTACT-GACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAA
EST: gi|211503690|gb|FL022245.1|FL022245
EST:     GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGG
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGG
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTG                         TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTT
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatctatgactaaaaccatgttaacattaccgtaatagtattattgtaacacatccaaaatcttgctttgcacttacag

- - - - - - - -  AAGCAA