1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCTAGCCTGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgtcatagctctgtgactcttttttgtatgtgtccacctccttttgtgaatttgctgatgttttttttttcaaatccag
species | Zea mays |
transcript | GRMZM2G023073_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTGGC-CAAAAG ACAAAT-CAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGC-TCTTTCGTGEST: gi|32824511|gb|CD964233.1|CD964233
genomic: TCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32806630|gb|CD958864.1|CD958864
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|50327206|gb|CO522332.1|CO522332
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|5439357|gb|AI820278.1|AI820278
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|113703481|gb|EE680985.1|EE680985
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: ATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32824032|gb|CD963754.1|CD963754
genomic: ATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|87151830|gb|DY396619.1|DY396619
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|89763664|gb|DY690763.1|DY690763
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32827014|gb|CD966692.1|CD966692
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32826552|gb|CD966230.1|CD966230
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32808719|gb|CD960953.1|CD960953
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTGEST: gi|32937735|gb|CF042554.1|CF042554
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
EST: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAG ACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
genomic: TGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgt ... tcaaatccagACAAATACAATGCTTCTTCCAGGTGATAGTGCCAGCCCAGCATCTTTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTAGCCTGAAACTTGCAGAGCAATACATCGAAGCATTCTCAAATCTGGCACAAAAGgtgagattgtcatagctctgtgactcttttttgtatgtgtccacctccttttgtgaatttgctgatgttttttttttcaaatccag
- - - - - - - - - - AGAGCA