1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTGGGTTTGTTCTGCTCGTCATACTTATAGTGGTCTACATACTGTGCATCAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatgatttaactaacttccctccttttaatatttgctctaaaacttcatatgtgactgaacttgccaagttatctgtaagtagcccctccgattt...
species | Zea mays |
transcript | GRMZM2G022897_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|61119400|gb|DN560361.1|DN560361
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|60341131|gb|DN208104.1|DN208104
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|110933639|gb|EE153865.1|EE153865
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|78110437|gb|DV528849.1|DV528849
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|211374493|gb|FL183031.1|FL183031
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|78075155|gb|DV503589.1|DV503589
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|101399868|gb|EB821781.1|EB821781
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|93016642|gb|EB642162.1|EB642162
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CGGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCGEST: gi|149073199|gb|EE161482.2|EE161482
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
EST: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCT CCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
genomic: CAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatga ... ctggctacagCCATATCAGCAATATCAGCGAAAAGGAATAGGTACCAGAGGGCAAAATCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGTTTGTTCTGCTCGTCATACTTATAGTGGTCTACATACTGTGCATCAGAAGGGGGCCATATGACTATGATTTTGACTTCCCTCAAGATTTGACCTgtaagtatgatttaactaacttccctccttttaatatttgctctaaaacttcatatgtgactgaacttgccaagttatctgtaagtagcccctccgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc