1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACAGCGTGGTTGGCATACGCTCCACAATTACTACACTATCACAGCTTCTGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttatacaaagagctctttcttctagtcgatgatatcagcatgtcgttacaggtacctgtgtttccagcctcacgcatgcttgtctggcatcccag
species | Zea mays |
transcript | GRMZM2G022308_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTCTACGCATTCAGATGGAEST: gi|50326619|gb|CO521745.1|CO521745
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGA
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTGCTAACGCAGEST: gi|16917540|gb|BM073331.1|BM073331
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAG
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAGEST: gi|211055806|gb|FL456006.1|FL456006
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAG
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTCTACGCATTCAGATGGATCACCTNTNGCT-STAACGCEST: gi|76918970|gb|DV167536.1|DV167536
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGATCACCT-T-GCTGCTAACGC
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAGEST: gi|71758907|gb|DR956844.1|DR956844
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAG
EST: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAG GTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAG
genomic: TGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttata ... ggcatcccagGTCAATCCACAGTTCTACGCATTCAGATGGATCACCTTGCTGCTAACGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAGCGTGGTTGGCATACGCTCCACAATTACTACACTATCACAGCTTCTGAGAAGACACGACGAGGAACTCTGGCGGCATTTAGAAGTTGTAACCAAGgtatcttatacaaagagctctttcttctagtcgatgatatcagcatgtcgttacaggtacctgtgtttccagcctcacgcatgcttgtctggcatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT