ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgattgaaaatatttaaataaacttgttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat...

Basic information

species	Zea mays
transcript	GRMZM2G019999_T01
intron #	8
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g36470.1 (Oryza sativa), 5'ss of exon 6

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgattgaaaatatttaaataaacttgttgcacaattgggctaag--tagtttaactctcaaattcatagctaagctattat
 || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||  | |||||||||    | ||| | |||||||  ||| ||  | ||    || |    ||||  || |  |  |     || | |  |   | |     
GCAACAAGTTCTTCTTGGCCATCTTGACTGGTCTCCAATGCACAAAGACCCAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttgtccttta--ttggatgggaaatattccaatcaatattttatggaacttcagtaagactattggagattctttatgcttgcccttgttccagg

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G25740.1 (Glycine max), 5'ss of exon 11

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacacct-tgtcctttcatcttgattgaaaatatt-taaataaacttgttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat
 ||  ||||||| ||||| |||||||| |||||||| |||||||||||||| |  |||||||| || || || ||||| ||||||||||||||||||||||||    |   |  | || || | | |       || | | |  |  |  |  | ||||||  |   | |      | |    ||   | ||        | 
GCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgcattatctcttccttactcttttctttgttatttcatgtaatataaaattggcatctctggggatgatattgggttt-cacctggatagaaa-

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G06710.1 (Glycine max), 5'ss of exon 11

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgattgaaaatatttaaataaacttgttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat------
 ||  ||||||| ||||| |||||||| |||||||| |||||||||||||| |  |||||||| || || || ||||| ||||||||||||||||||||||||  |  ||   | ||   |   ||    ||  || |    | || |||   ||     | | | | |||     | | |   ||| | | ||| | |       
GCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtat-ctatgcattatcccttctttt----atgcttcagccgaattcttgattaagcacac-atgaaatttttggatgagaaaaataacaaggctttcagttactt

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 11

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg-tcctttcatcttgattgaaaatatttaaataaacttg-ttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat
|||  |||| || ||||| ||||| |||||| | ||  | ||||||||||| |  ||||||||||| |||||||  || |||||||| |||||||||||||||    ||  |||||     ||  ||     |   |  ||   ||    ||     |     |    ||| |  |||| | || || | |   | |  |||
ACAAGAAGTCCTCCTTGGCCATCTCGACTGGACCCCTGTTCACAAAGATCCCATGTTCTGGCGTGATAACATTAGTAACTTTGAAGAGAATGATTTCCAGgtatttttttctccttctgagttctttcttcgtggctttatcttctaaactgtgatgtcttcattgacagtgtg-ctct-acatgcacaacatcgatgatat

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S51_320V6.1 (Physcomitrella patens), 5'ss of exon 10

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgat-tgaaaatatttaaataaacttgttgcacaattgggctaagtagtttaactctcaaattcata-gctaagctattat------------------------------------------------------------------------
|   |||||  ||  |||  ||||||||||| || ||||||| ||||||||    || ||||| |||||||| | ||| |||||||||||||| ||||||||     ||| |||||    |||||   | | ||||    ||    | ||| |  |      |  | |  |||     ||  || ||  | | |  | |  |                                                                        
AGGCCAAGTGTTTTCTGGAAATCTGGACTGGACTTCAATGCATAAAGATCCCGTGTTTTGGCGCGAGAACATCACCAAGTTTGAAGAAAATGACTTCCAGgttattattgaccttt----ttgatgctatactattctgttagttctcttgaattaacaaattccgcaccttagaga-catgttgatgtgtttaagtgtattccgttgacgcccgttaaatttcgtgtaatggactgcattatagacatgtaagttgattttcattgtgtgcag

upper sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S21_158V6.1 (Physcomitrella patens), 5'ss of exon 10

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgattgaaaatatttaaataaacttgttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat--
|    ||||  |    ||  ||||||| |||||||||||||||||||||||    |||||||||||||||||   ||| ||||||||||  || || ||||| |  |||| | | |  ||    |||      ||     | | |  |  |     | | ||   | | | |   |     ||  || | ||  |   ||  
AGGTGAAGTATTCTCCGGGAATCTGGATTGGTCTCCAATGCACAAAGATCCTGTGTTCTGGCGTGAGAACATCTCCAAGTTTGAAGAAAGCGACTTTCAGgttcttcttgacgtct--tcaatgttgttctctttcttccatattcttctccttccttgtctctctggctcactccgtctcttgctaacaaaattgcaattg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|149005181|gb|EE039721.2|EE039721

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|24765080|gb|CA400241.1|CA400241

EST:     AATTTTGAAGAAAATGATTTCCAG                         ATTCTGAGAGTTCTCATGCCAATCATTGACACATCAAGTGACACCACCGCT
genomic: AATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|78080157|gb|DV508569.1|DV508569

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5525563|gb|AI861456.1|AI861456

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18171940|gb|BM347328.1|BM347328

EST:     AACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: AACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|60401227|gb|DN234034.1|DN234034

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|32851781|gb|CD991462.1|CD991462

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGTGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5847532|gb|AW000611.1|AW000611

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|6095647|gb|AW120314.1|AW120314

EST:     CAAGTTTCTGGCGTGAGAGCATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTNTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|149089827|gb|EE179105.2|EE179105

EST:     CAAGTTTTTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTTTCATGACAATCATTGACACATCAAGTGACACCCCCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|6056757|gb|AW091162.1|AW091162

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|17931119|gb|BM268079.1|BM268079

EST:     CAAGTTTCTGGCGTGAGAACATTACCAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5804594|gb|AI979564.1|AI979564

EST:     CAAGTTTTTGGCGTGAGACCATTACCAATTTTGAAGAAAATGATTTCCAG                         ATTTTGCGAGTTCTCATGCCAATCATTGCCCCATCAAGTGACNCCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18176630|gb|BM351563.1|BM351563

EST:     AACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: AACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18170622|gb|BM340462.1|BM340462

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|13198137|gb|BG354171.1|BG354171

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18172557|gb|BM347945.1|BM347945

EST:     AACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: AACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|148949226|gb|EC894668.2|EC894668

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5525725|gb|AI861618.1|AI861618

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5804492|gb|AI979462.1|AI979462

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|6021608|gb|AW066536.1|AW066536

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTTTGCGAGTTCTCATGCCAATCATTGACCCATCAAGTGANNNNNNNGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5915146|gb|AW052787.1|AW052787

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|16922374|gb|BM075552.1|BM075552

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18168708|gb|BM338548.1|BM338548

EST:     TTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCGCCGCT
genomic: TTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|37390466|gb|CF632463.1|CF632463

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|40336209|gb|CK370279.1|CK370279

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|12968772|gb|BG265718.1|BG265718

EST:     CAAGTTTCTGGCGTGAGAACATTANCAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5846782|gb|AI999865.1|AI999865

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|76909294|gb|DV163314.1|DV163314

EST:     CAAGTTTTTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTTTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCCCCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5929113|gb|AW056405.1|AW056405

EST:     ATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCNCCGCT
genomic: ATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5901299|gb|AW042399.1|AW042399

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|60397303|gb|DN230119.1|DN230119

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5325216|gb|AI783407.1|AI783407

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5296243|gb|AI782923.1|AI782923

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|149089817|gb|EE179093.2|EE179093

EST:     CAAGTTTTTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTTTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18175302|gb|BM350665.1|BM350665

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|6653953|gb|AW267358.1|AW267358

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|60350326|gb|DN217299.1|DN217299

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|5762099|gb|AI967147.1|AI967147

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|148970034|gb|EE020954.2|EE020954

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18170660|gb|BM340500.1|BM340500

EST:     GGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: GGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|89247015|gb|DY618801.1|DY618801

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|6020588|gb|AW065621.1|AW065621

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|18170707|gb|BM340547.1|BM340547

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|78022792|gb|DV491179.1|DV491179

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|61119705|gb|DN560666.1|DN560666

EST:     CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG                         ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

EST: gi|32851780|gb|CD991461.1|CD991461

EST:     CAAGTTTCTGGCGTGAGAACATTACCACTTTTGAAGAAAATGATTTCCAG                         ATTCTGCGTGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 252

ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttg ... aacttggcagATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTCTTGCCGTGGCCTGCTACGACCTCTCACAATTCCTTCAGTACCATCCAT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 323

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 314

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 379

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGCAAGTTCTTCTTGGTCATCTGGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAGgtacaccttgtcctttcatcttgattgaaaatatttaaataaacttgttgcacaattgggctaagtagtttaactctcaaattcatagctaagctattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaac