Sequence
atgc intronic sequence ATGC exonic sequenceAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgcttcaagaatggttctccatattatgattttaaacagttccattttgtttgagaatgcaaaatgtcaacctttggactgacaccctttatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 9
AGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgcttcaagaatggttctccatattatgattttaaacagttccattttgtttgagaatgcaaaatgtcaacctttggactgacaccc-tttatga----
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--GGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCgtaagttgcttct----tgcttcttcttttt-taactataagcatggtttagctgtttaggttctcattttgtttgtatagaggttcatactggcatctgaggtt
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgcttcaagaatggttctccatattatgattttaa--acagttccattt------tgtttg-agaatgcaaaatgtcaacct---ttggactgacaccctttatga
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--GGTGAAGATGTTGCTTTTGAACCGTCAAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGCgtaagt--------gcatggtgcttttgactacaacattcataatagttccatttaaacagtgcttatattctatgtaatctctgcctgttttgaaatgcttttcttt----
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 9
AGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgcttcaagaatggttctccatattatg---attttaaacagttccattttgtt--tgagaatgcaaaatgtcaacctttggactgacaccctttatga
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--GGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTACgtaagtt----cagaaataccttttgagatatggttcatttaagatgaatttaggtggctgcctggaagtccaaacaatgatttataaacgtaacaccagtata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361636|gb|CD445993.1|CD445993EST: TGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC AAGGAAAATCTGTTCAACAAATGGTCAATGAAGCCCTTCAACGGGTGCCTA
genomic: TGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgct ... ttggaaacagAAGGAAAATCTGTTCAACAAATGGTCAATGAAGCCCTTCAACGGGTGCCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCgtaagttgcttcaagaatggttctccatattatgattttaaacagttccattttgtttgagaatgcaaaatgtcaacctttggactgacaccctttatga
- - - - - - - - - - - - - GCAAAG