Sequence
atgc intronic sequence ATGC exonic sequenceGGAGCTCTTGATGACGTTGTGATGGGTGGTGTTAGTGAAAGTACATTCCAAATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAGgtatttttatttttatttgctgaattttgtatatgagatgttgcatttgcttgaaatgatggtattctaagctaataacctgtggataacctatcttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019358_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 8
GGAGCTCTTGATGACGTTGTGATGGGTGGTGTTAGTGAAAGTACATTCCAAATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAGgtatttttattttt-------atttgctgaatt-ttgtatatgagatgttgcatttgcttgaaatgatggtattctaagctaataacctgtggataacctatcttgtag
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GGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGgtattttgtttttttttaatgatccctcgactccttgtatatgcgatgtggcaattctttggaaaacctctagtctaagcaggt---ctgtg--caatgtattctag--
upper sequence: GRMZM2G019358_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 8
GGAGCTCTTGATGACGTTGTGATGGGTGGTGTTAGTGAAAGTACATTCCAAATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAGgtatttttatttttatttgctgaattttgtatatgagatgttgcatttgcttgaaatgatggtattctaa-gctaataacctgtggataacctatcttgtag--
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GGTGCTTTAGATGATGTGGTGATGGGTGGAGTTAGTGAAAGTACATTTCAAATTGACCCAAGTGGGGGTGAAAATGGTGGACCAACTGGGATTTTTAAAGgtatgtgtcaaatt-cttgcaaatgcatgtg-actgcactttggggtaatttgtaac--ctgtgttttaatgcttgaaataatacaaatgtgtgtctagttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13249799|gb|BG360704.1|BG360704EST: AATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAG GGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAG
genomic: AATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAGgtatttttat ... tatcttgtagGGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCTCTTGATGACGTTGTGATGGGTGGTGTTAGTGAAAGTACATTCCAAATCTTGCCAACAGGAAGTGAAAGTAGTGGACCAACTGGGTTGTTCAAAGgtatttttatttttatttgctgaattttgtatatgagatgttgcatttgcttgaaatgatggtattctaagctaataacctgtggataacctatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA