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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGAACCAACTGCGAATCTTAAAAGGACTTTCTGAAAATCACCGAGAGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcataattaggttatatacttatatttattatatcacactatccaatttctgaaaacaacttagcatttgtttgtagtaatagattgatgaaca...

Basic information

species Zea mays
transcript GRMZM2G019260_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78089474|gb|DV517848.1|DV517848
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|76285162|gb|DV024730.1|DV024730
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|74234774|gb|DT642688.1|DT642688
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|78093391|gb|DV521765.1|DV521765
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|9254989|gb|BE345457.1|BE345457
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCT
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCT
EST: gi|60345166|gb|DN212139.1|DN212139
EST:     AGGCATATGAGTCCGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAGGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|58029394|gb|CX724821.1|CX724821
EST:     AGGCATATGAGTCCGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|211480442|gb|FL214852.1|FL214852
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGAGAACCAACTGCGAATCTTAAAAGGACTTTCTGAAAATCACCGAGAGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcataattaggttatatacttatatttattatatcacactatccaatttctgaaaacaacttagcatttgtttgtagtaatagattgatgaaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaacaa