1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTGCAATGGAGCTTCAGTACATGGGTCCTCTGAACAAGGATCCAGCTCTGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatttgttggtaaacaaaaattatttcccttatcacgggacgggaatctactgtctttgttaagtctgcatgctcttcagcgtttaaatccagctcattttttgcag
species | Zea mays |
transcript | GRMZM2G019225_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGGTGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|211386805|gb|FL474300.1|FL474300
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|211541883|gb|FL034159.1|FL034159
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|88753366|gb|DY537507.1|DY537507
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|211541882|gb|FL034158.1|FL034158
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|32935306|gb|CF040118.1|CF040118
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: ACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|211541881|gb|FL034157.1|FL034157
genomic: ACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGEST: gi|60401059|gb|DN233866.1|DN233866
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGCAATGGAGCTTCAGTACATGGGTCCTCTGAACAAGGATCCAGCTCTGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatttgttggtaaacaaaaattatttcccttatcacgggacgggaatctactgtctttgttaagtctgcatgctcttcagcgtttaaatccagctcattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG