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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGGCTCAAGGAAGGCAAAGCCATAAATCTGTCGCTGTCAGCCCTAGCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAGgtaaataaaatccctaatatactggtgtctggcagttgtcacaacagttttttattttcaagacaatgatacaaattcataattcttag

Basic information

species Zea mays
transcript GRMZM2G018951_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018951_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g15540.1 (Oryza sativa), 5'ss of exon 7
GGAAAAGGCTCAAGGAAGGCAAAGCCATAAATCTGTCGCTGTCAGCCCTAGCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAGgtaaataaaatccctaatatactggtgtctggcagttgtcacaacagttttttattttcaagacaatgatacaaattcataattcttag-----------------
||||||||||||||||||| |||||||||||| ||||| ||||||||||||  ||||| || || ||||||||||| |||||| ||||  ||||||| |||||||| |||  | ||||  ||  |||| ||| | |||  |||    |    | |  |||  | |||   |||||    |||    | |                 
GGAAAAGGCTCAAGGAAGGGAAAGCCATAAATTTGTCGTTGTCAGCCCTAGGCGATGTGATTGACGCACTACAGACTAAAAAACCCCATGTCCCTTACAGgtaaatgaaactcataatgcacaagtgtatggaaattggtacatggctgccatttcatcagaaaaatatgacaaaacactaacatgtcgcccttccaaatttgcag