1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattactttattgcacttgtgactgaaaaatccacctgtcctgtcctaacaaaaaaaagtaggaaacacattgttgataaacattttatccgcctaatggagcagtgccacaattgttgaacttgattgtgtctgactgtcttctggttattcaaaaatcaattaatcaattatctttttcag
species | Zea mays |
transcript | GRMZM2G018697_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|22490622|gb|BU050545.1|BU050545
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|61118430|gb|DN559391.1|DN559391
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|113563309|gb|DW738296.1|DW738296
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: GGTGTTTTGTTCATTTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAEST: gi|87152471|gb|DY397260.1|DY397260
genomic: GGTGTTTTGTTCA-TTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGA
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|13126372|gb|BG316942.1|BG316942
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: CGATGAAGGAATTGCAGCAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGEST: gi|61118429|gb|DN559390.1|DN559390
genomic: CGATGAAGGAATTGCAG-AGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTG
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|31612366|gb|CD568988.1|CD568988
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|213174323|gb|FM191608.1|FM191608
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTATTCATTGACGAG GTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
genomic: TCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattacttt ... tctttttcagGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtattactttattgcacttgtgactgaaaaatccacctgtcctgtcctaacaaaaaaaagtaggaaacacattgttgataaacattttatccgcctaatggagcagtgccacaattgttgaacttgattgtgtctgactgtcttctggttattcaaaaatcaattaatcaattatctttttcag
- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - GAGCTT