1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttgtacgacctgatatggttctttgattctttcatattcttgagtgcacaggcaatagcatatagcttaattaacccgaagtgtgttttaactccag
species | Zea mays |
transcript | GRMZM2G017853_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|18177348|gb|BM378558.1|BM378558
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|76927174|gb|DV171165.1|DV171165
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGGAGGAGAATGAAGAATTCAAAAAEST: gi|166526707|gb|EG092175.1|EG092175
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAG-AGAATGGAGAATTCAAAAA
EST: GTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAAACTCGGGCTEST: gi|71310881|gb|DR791743.1|DR791743
genomic: GTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAA-CTCGGGCT
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|78089273|gb|DV517647.1|DV517647
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|71308383|gb|DR790420.1|DR790420
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|74233404|gb|DT641318.1|DT641318
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|211289510|gb|FL460651.1|FL460651
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|76927172|gb|DV171164.1|DV171164
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|91051135|gb|EB161553.1|EB161553
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|113659938|gb|DW817941.1|DW817941
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: CAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTGEST: gi|78085441|gb|DV513834.1|DV513834
genomic: CAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
EST: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTG GTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
genomic: TGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttg ... ttaactccagGTACTGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTTTGGAGGCTTTACTGgttagtcttgtacgacctgatatggttctttgattctttcatattcttgagtgcacaggcaatagcatatagcttaattaacccgaagtgtgttttaactccag
- - - - - - - - GCTGTT
- - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG