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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtttgttgtcaaaatgtcaactaatggctcttcaccttgtaaccatttatatttatcgtattatctttgtcttccctgtaatttttatggcaatgtttggctactttgcctaaaattatttgcctactttttttttctatag

Basic information

species Zea mays
transcript GRMZM2G017086_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 8
GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt--------------------tgttgtcaaaatgtcaactaatggctcttcaccttgtaa---ccatttatatttatcgtattatctttgtcttccctgtaatttt-----tatggcaatgtttggctactttgcctaaaattatttgcctactttttttttctatag
|||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||  ||||||||  | ||                    |  | |  || |||  | | |||  | ||  ||| |  |    |     |      |   ||  |||| || ||||| |   | |      |  | | ||||||||| ||  || ||  |||  ||| ||  |||  |         
GATGCAGAAGAATGCTGGACCCAATTGGTGTATACACTTTCTCAAACTCTTACATCAGAAACAAGgtaatttattgcagttattcacctaacagctcatatgcaattgtggagtgatgtttgttttcctggggatgctcccccctccccccccccttccctttttcctccctctctctctgagtacacagtagtgtttggctgctccgcttaccatt--ttgtcttttttggtag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934266|gb|CF039078.1|CF039078
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32866635|gb|CF006317.1|CF006317
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|241994792|gb|GR421145.1|GR421145
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32932531|gb|CF037343.1|CF037343
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|211437528|gb|FK975648.1|FK975648
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32863109|gb|CF002791.1|CF002791
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32930082|gb|CF034894.1|CF034894
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32945380|gb|CF050199.1|CF050199
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32911302|gb|CF016114.1|CF016114
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32932473|gb|CF037285.1|CF037285
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCCAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|32931528|gb|CF036340.1|CF036340
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGACCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|67017287|gb|CO446036.1|CO446036
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG                         TGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG
genomic: TGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAGgtaacctgtt ... ttttctatagTGAATCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAG