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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAGgtaagtttgtaattgatgtcttcttactgtatcgtagtctattatctttcatggtacatcagtatatttaatttatttgttggttgtcattgctgttgcttctggtgatgaccttattttttattgtag

Basic information

species Zea mays
transcript GRMZM2G014994_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014994_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 5'ss of exon 9
CCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAGgtaagtttgtaattgatgtcttcttactgtatcgtagtctattatctttcatggtacatcagtatatttaatttatttgttggttgtcattgctgttgcttctggtgatgaccttattttttattgtag
|||| | || || |   |||||||||| ||||| || |||| ||| ||||| |||||| | || |||||||| |||||||||||||||| ||| |||||||||| | | ||| |  || | | || || | | | |    ||  |||  ||  || || ||| |  || ||||| |            |   ||| |||  ||| | || |  ||| ||   |||||||
CCAACTACCAGAGTTTCTTGGTGGTTCTTGCACGTGCTCTAGCCAGGGAGGATGCCTGCGATCCAACAAAGGCCCCTGGAGTGATCCTTTAATTATGAAGgtaaatctctaaatt-tgccatttttctct-tagcatatcatagtctg-cacagtgcagcagga-gttaaatttgt------------aactctgctgccactgttcattaatttaattccaattgtag

upper sequence: GRMZM2G014994_T03 (Zea mays), 5'ss of exon 8
lower sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 9
CCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAGgtaagtttgtaattgatgtcttcttactgtatcgtagtctattatctttcatggtacatcagtatatttaatttatttgttggttgtcattgctgttgcttctggtgatgaccttattttttattgtag
 ||| | || || | ||| || || | ||||| |||| ||||| | ||||||||| |||||||||||||||| ||||||| |||||||  |||| |  ||| | ||   |  |||     || || || |||   | || ||||||||    ||||    |||  |  |||| |  ||||||  |    || | |                                  
TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgtccctttttg-----tttttgct-tataagaatcaattatctt----ggta----agttgaactaatattattgttgtcttgttttacag----------------------------------

upper sequence: GRMZM2G014994_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 9
CCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAGgtaag-----tttgtaattga-tgtcttcttactgtatcgt------agtctattatctttcatggtacatcagtatatttaatttatttgttggttgtcattgctgttgcttctggtga---tgac-cttattt---tttattgtag-------
 ||| |||| || | ||| ||||| || ||||||||| |||   |||| ||||||||||||||||| |||||||| |||| |||||||  ||||||||||||| |     |||||  | || || ||| |   ||||   |      | || |||   || || |  |  |  | |   || | |  || | | |   |  ||  | | |    |||  |   |||  || ||||   ||| || ||        
TCAACTGCCTGACTTCTTGGGTGGCTCTTGCACATGTGCTACTGATGGTGGGTGCCTGAGGTCTAATAAAGGTCCATGGAATGATCCTGAAATAATGAAGgtaggagtcctttgtgttggagtggcttttgcttgtagtatgtattgattccattcctttgcaagaaattttggcagccttgaatctttaggttgagctggtttatctggagattggccaaattgattctcatttaagttttttctaatttgtag