Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAACTAAAACATTGATCCATGCATTTCTTGATCCTGCCAAATCACTGACACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatcccatttgaaactcttttttttttgtattagttattccttcctcagatcccacttatgtgggagccgccaacactgggtctgtcctatgcactggctgattgttttttctgcttaccag

Basic information

species Zea mays
transcript GRMZM2G013908_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 9
GTTAACTAAAACATTGATCCATGCATTTCTTGATCCTGCCAAATCACTGACACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatcccatttgaaactcttttttttttgtatt--agttattccttcctca-gatcccacttatgtgggagccgccaacactgggtctgtcctatgcactggctgattgttttttctgcttaccag
| | || |  || ||| |||| | |||||||||||||   |||||| |||||||||| ||||||||  | ||||||||||||||| |||||||||| || |||  |||  ||  || ||  | |  |||| ||||  ||  |    || ||||  ||     || | |   ||                                                       
GGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAgtaagtcctgttc-aagctaatctaattttatatttcagcaaaattttgctcacaatttttgttctttaccag-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661346|gb|BM501365.1|BM501365
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGGA
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGG-A
EST: gi|26455852|gb|CA827435.1|CA827435
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
EST: gi|19822284|gb|BQ048308.1|BQ048308
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
EST: gi|211271502|gb|FL060904.1|FL060904
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG