1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCGAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaag
species | Zea mays |
transcript | GRMZM2G013750_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGTTTTEST: gi|5847143|gb|AW000222.1|AW000222
genomic: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60345832|gb|DN212805.1|DN212805
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60349290|gb|DN216263.1|DN216263
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60344063|gb|DN211036.1|DN211036
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAG-TGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60358924|gb|DN225897.1|DN225897
genomic: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|211088675|gb|FL328946.1|FL328946
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTEST: gi|67021450|gb|CO450199.1|CO450199
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|33095588|gb|CF055582.1|CF055582
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCGAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT