1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCGAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaag
species | Zea mays |
transcript | GRMZM2G013750_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGTTTTEST: gi|78545102|gb|DV622600.1|DV622600
genomic: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60394675|gb|DN227545.1|DN227545
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|5847143|gb|AW000222.1|AW000222
genomic: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|37377438|gb|CF625322.1|CF625322
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60345832|gb|DN212805.1|DN212805
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60396663|gb|DN229531.1|DN229531
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|149074395|gb|EE162783.2|EE162783
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|67021450|gb|CO450199.1|CO450199
genomic: CCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|37400251|gb|CF637475.1|CF637475
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60349290|gb|DN216263.1|DN216263
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|60358924|gb|DN225897.1|DN225897
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|211414360|gb|FL328790.1|FL328790
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|211088675|gb|FL328946.1|FL328946
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTEST: gi|78023300|gb|DV491687.1|DV491687
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGT
EST: CAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTEST: gi|33095588|gb|CF055582.1|CF055582
genomic: CAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTTGGTACTTGGTGCTAGCACCTCATGATCCTATGCAATCGAGCCTTCTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT