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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTAATGTACTGAGTCTGTCACTTAGATGGGACTGTGGCATGTTCATGCTCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacattgtctcattttctcataatggatatgatgtatctgcaaaagctgaaacaaaattgcatgcactttgtag

Basic information

species Zea mays
transcript GRMZM2G012601_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012601_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g25370.1 (Oryza sativa), 5'ss of exon 8
GCCTAATGTACTGAGTCTGTCACTTAGATGGGACTGTGGCATGTTCATGCTCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacattg----tctcattttctcataatggatatgatgtatctgcaa-aagctgaaacaaaattgcatgcactttgtag------------------------------------------
                            ||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||| | |||||||||||||  | ||||    |  |  || ||   |||  ||||| | ||  || || ||| | |||   ||||  |||   ||| |                                            
---------------------------GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGATATGGGCCTTACTTTTGGACAGgtaccaaattggatcttgcgcttcctgccaatttatatgctctacttggaagaagttaaaatggaatt-tatgatttttttttcaagtgaaattaactggttttgaaattggttgtctttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13558577|gb|BG549933.1|BG549933
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAG                         AAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
EST: gi|88748344|gb|DY532485.1|DY532485
EST:     TCAAATACATTGACTTTTACAGCAGAGATATGGACCTCATTTTTGGACAG                         AAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
EST: gi|113703135|gb|EE680639.1|EE680639
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAG                         AAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
EST: gi|13558246|gb|BG549602.1|BG549602
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAG                         AAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
EST: gi|211205847|gb|FL344232.1|FL344232
EST:     AGAGATATGGACCTCATTTTTGGACAG                         AAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: AGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
EST: gi|16380338|gb|BI993438.1|BI993438
EST:     ACTTCTACAGCAGAGATATGGACCTCATTTTTGGGCAG                         AAGCAAATACACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG
genomic: ACTTCTACAGCAGAGATATGGACCTCATTTTTGGACAGgtaatacatt ... cactttgtagAAGCAAATGCACTACTTCCGCAGGAGGACGGCAAAGGAAATACTGAGTTTG