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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCATCGTAGTTGGCTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatctttaacttcgagctgacaaatctaaaaaaaaataatttctcaatgtagctgctttacatcattacag

Basic information

species Zea mays
transcript GRMZM2G011364_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011364_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g39650.1 (Oryza sativa), 5'ss of exon 8
GCATCATCGTAGTTGGCTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatcttta-----------------acttcgagctgacaaatctaaaaaaaaataatttctcaatgtagctgctttacatcattacag
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GCATTATTGTACTAAGTTCAAAAAATATGCGGTCGCTTGTAACAGTTAAAAAGGCACATCTTGGCATTATTACTACATTGGCATTCTCTCAAGATTCAAGgtcagtatatatgccgtagactctcgatctgcttggagtttacaaacgtgacagatg-tgatttctcaatgttggtattctattttatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469466|gb|DY235836.1|DY235836
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|148957846|gb|EC903996.2|EC903996
EST:     AAGGCTCATCTTGGTATTGTTATTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTTTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|86473129|gb|DY239499.1|DY239499
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|5871274|gb|AW017745.1|AW017745
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|211396348|gb|FL437335.1|FL437335
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|78081363|gb|DV509775.1|DV509775
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|149096645|gb|EE182410.2|EE182410
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|32945451|gb|CF050270.1|CF050270
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTATAATGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|6020933|gb|AW065861.1|AW065861
EST:     AAGGCTCATCTTGGTATTGGTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|78083928|gb|DV512321.1|DV512321
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|149070572|gb|EE158978.2|EE158978
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTTTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|78021573|gb|DV489960.1|DV489960
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|71595876|gb|DR906627.1|DR906627
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
EST: gi|110219160|gb|EC901058.1|EC901058
EST:     AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG
genomic: AAGGCTCATCTTGGTATTGTTACTACGCTGACCTTCTCTCAGGATTCAAGgttagtatct ... atcattacagAACATTGCTGTCAACTTCCTTCGACTCTTCTGCAAGGGTGACATCTGTTGG