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GTTGAATGCAGAACTTCGCAACATTGAAAGTACTTTATCAAGTGAGAGAGAAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactactttattaagtggtctttttggatcaactcagtattcttgttactgatcatcaaatatcaatctgaatataatccgttcattttgcatgtatct...
species | Zea mays |
transcript | GRMZM2G011219_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATGCATGTGAATGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAG GAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAEST: gi|67019074|gb|CO447823.1|CO447823
genomic: AAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactacttt ... ctatttgtagGAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
EST: TGCATGTGTTCGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAG GAAAGTGCTCTCATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAEST: gi|211348173|gb|FL379645.1|FL379645
genomic: TGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactacttt ... ctatttgtagGAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
EST: AAATGCATGTGAATGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAG GAAAGTGGCCCCTTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACAEST: gi|211068379|gb|FL392617.1|FL392617
genomic: AAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactacttt ... ctatttgtagGAAAGT-G-CTC-TTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACA
EST: AAATGCATGTGAATGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAG GAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAEST: gi|60399347|gb|DN232161.1|DN232161
genomic: AAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactacttt ... ctatttgtagGAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
EST: AAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAG GAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
genomic: AAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactacttt ... ctatttgtagGAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATGCAGAACTTCGCAACATTGAAAGTACTTTATCAAGTGAGAGAGAAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGgtactactttattaagtggtctttttggatcaactcagtattcttgttactgatcatcaaatatcaatctgaatataatccgttcattttgcatgtatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT