1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTTGAAAAATCTCATGAGTAAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaatgttctgattgctcaaccttcaaattcatgatggactctggtgttattattcttgatgcagttatattatctggcctgattgtgtatgtacag
species | Zea mays |
transcript | GRMZM2G011136_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG GAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTTEST: gi|6020843|gb|AW065771.1|AW065771
genomic: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaa ... gtatgtacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTT
EST: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG GAGGGCTGGTACAAAGACTGAACCTGATCGGNGAATATTTGTAAAGCACTTEST: gi|5325032|gb|AI783223.1|AI783223
genomic: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaa ... gtatgtacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTT
EST: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG GAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTTEST: gi|5846844|gb|AI999927.1|AI999927
genomic: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaa ... gtatgtacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTT
EST: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG GAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTT
genomic: AAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaa ... gtatgtacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAAAAATCTCATGAGTAAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAGgtagattcaatgttctgattgctcaaccttcaaattcatgatggactctggtgttattattcttgatgcagttatattatctggcctgattgtgtatgtacag
- - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG