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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcgatgatacccacaagtcgtttcctccctacaaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G011078_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011078_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g38590.1 (Oryza sativa), 5'ss of exon 8
GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcgatgatacccacaagtcgtttcctccctacaaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcag-----------------------------------------------------
|||| ||||| |||||||| ||  |||| || ||||| || |||||||| ||||| ||||| || |||||||| ||||| ||||| || ||||||||||||  ||  |||  ||  |||     | |  || || |  |||||   | |   || | ||| |||  |     |   |||  ||                                                     
GTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaatattact-acttgtca----cacattataatttgcattt---tttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttggctcataatttatttctgcaaaacgtatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927248|gb|DV171197.1|DV171197
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
EST: gi|71440938|gb|DR821988.1|DR821988
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         AAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
EST: gi|78080153|gb|DV508565.1|DV508565
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG