1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATGAAAAGTATCCTCATATTATTAATGTCGATAAAGGAAATCTAGAGGATCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatgacagatagatatgccataattttgcatgtgtgggatttgcccttttttctataacaccggatagaggtgtaccagtgcatgtaagagttgc...
species | Zea mays |
transcript | GRMZM2G008242_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTATEST: gi|32942178|gb|CF046997.1|CF046997
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTATEST: gi|40335909|gb|CK369979.1|CK369979
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTATEST: gi|37419005|gb|CF647176.1|CF647176
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTATEST: gi|71433734|gb|DR814784.1|DR814784
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTATEST: gi|211378303|gb|FL452845.1|FL452845
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTATEST: gi|78022444|gb|DV490831.1|DV490831
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTATEST: gi|12968783|gb|BG265820.1|BG265820
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTATEST: gi|78115489|gb|DV533877.1|DV533877
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTATEST: gi|6194474|gb|AW146578.1|AW146578
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
EST: ATCGGCAAGAGGGATCTGTAGAAGATTCACTGGGCAGGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGEST: gi|37387733|gb|CF631065.1|CF631065
genomic: ATCGGCAAGAGGGATCTGTAGAAGATTCACTGG-CAG-ATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGG
EST: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAG AGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGGGTGGACGTAT
genomic: TCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatga ... gttattacagAGGTGATGATCCGTGGCCTTACACAAGTGGCCTGGGAACGTGTGGACGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAAAGTATCCTCATATTATTAATGTCGATAAAGGAAATCTAGAGGATCATCGGCAAGAGGGATCTGTAGAAGATTCACTGGCAGATAGTTATGAAGgtaataatgacagatagatatgccataattttgcatgtgtgggatttgcccttttttctataacaccggatagaggtgtaccagtgcatgtaagagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT