1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTTACCAAGGAATCCCCATGGTTTTGGATGGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgtctacgaacaacctgattttttctcagacaactgtggcgaaccatttcatgttgatgtactatgttggactacaaaatagatgaaacttct...
species | Zea mays |
transcript | GRMZM2G007871_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCTCCGGCCTGCACTCAGGGTTATTGAGCTTTCTCAAAATATTATCCAG GCTGTACCATTAAGTGEST: gi|33097974|gb|CF057934.1|CF057934
genomic: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgt ... acatttgcagGCTGTACCATTAAGTG
EST: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAG GCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATAEST: gi|87156492|gb|DY401281.1|DY401281
genomic: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgt ... acatttgcagGCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATA
EST: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAG GCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGEST: gi|87157186|gb|DY401975.1|DY401975
genomic: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgt ... acatttgcagGCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCG
EST: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAG GCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATAEST: gi|87157024|gb|DY401813.1|DY401813
genomic: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgt ... acatttgcagGCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATA
EST: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAG GCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATA
genomic: GGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgt ... acatttgcagGCTGTACCATTAAGTGCACGAAAAGCTAGTGGTGCTAACTCGGAAGGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTACCAAGGAATCCCCATGGTTTTGGATGGCTCCGGCCTGCACTCAGTGTTATTGAGCTTTCTCAAAATATTATCCAGgtatttttgtctacgaacaacctgattttttctcagacaactgtggcgaaccatttcatgttgatgtactatgttggactacaaaatagatgaaacttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaata