1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGAATGTGACTCACAGATAAACCGTATGGCCAAGGAACAGCAGAAACTTCAACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAGgtagttcctggttcttctgcattttgtactttataattgattgcttgaacacgttttaatacctggtaataacatattag
species | Zea mays |
transcript | GRMZM2G006452_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAAAATGGAAAATGAG GTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTCGATAAGEST: gi|33095034|gb|CF055028.1|CF055028
genomic: AGAAAATGGAAAATGAGgtagttcctg ... aacatattagGTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAG
EST: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAG GTTAAGAGGATGGAGGTAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAGEST: gi|211188349|gb|FL216447.1|FL216447
genomic: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAGgtagttcctg ... aacatattagGTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAG
EST: AGAAAATGGAAAATGAG GTTAATAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTCGATAAGEST: gi|32930664|gb|CF035476.1|CF035476
genomic: AGAAAATGGAAAATGAGgtagttcctg ... aacatattagGTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAG
EST: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAG GTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAGEST: gi|32933775|gb|CF038587.1|CF038587
genomic: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAGgtagttcctg ... aacatattagGTTAAGAGGATGGAGATAGAGCAGAAGGATTGCTCTTCAATAGTTGATAAG
EST: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGGG GTTAAGAGGATGGAGATCGGAGG-GA-GGATTGCTCTTCAATAGTTGATAA
genomic: AACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAGgtagttcctg ... aacatattagGTTAAGAGGATGGAGATAG-AGCAGAAGGATTGCTCTTCAATAGTTGATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGTGACTCACAGATAAACCGTATGGCCAAGGAACAGCAGAAACTTCAACAGAAGTTAAGTGATTCAAATGTTGAGAGGAAGAAAATGGAAAATGAGgtagttcctggttcttctgcattttgtactttataattgattgcttgaacacgttttaatacctggtaataacatattag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA