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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgacccctaagtattatattgaaatctacgtcaaag

Basic information

species Zea mays
transcript GRMZM2G006130_T06
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 8
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttta-----cactgcttca---ctttatttatttttctttcct--atcatg----acccctaagtattatattgaaatctacgtcaaag-------------------
||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     || |  |||    ||| ||||  || ||  |||   |||||      ||  | | |  ||| ||    ||||    |||                    
GAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATATTATGAGTTTCTCCAGgtaccagtttagttgacattatttccgcccttcattttcttatcactccctaatcatatattgcctttgaattctatttttttttctaatgaaaaatttgaactctacatcaaag

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 8
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgaccc--ctaagtattatatt-gaaatctacgtcaaag-----------------------------
||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||||    | | | |   |   |||   |||| ||||| | ||     |  ||||   || ||  ||||  |                                  
GAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATATTATGAATTTCTCCAGgtactagtttacttgacattattcc-tgcctttcattttcttatcacgtcctaatcatatattgcctttgagttctatatttttctaatgaaaactttgaactccacatcaaag

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA19G30450.1 (Glycine max), 5'ss of exon 8
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgta----ccagtttacac-tgcttcactttatttatttttctttcctatcatgacccctaagtattatattgaaatctacgtcaaag----------------------------------
|| |   || ||||| |||||||| ||||| ||||| ||||| || |||||||||   ||||||||||||||||| ||||| ||||||||||| || || |||    ||  ||||||  |  |  |  |||    | |    ||| ||||  | |   | | | |  |  ||  ||    || |||                                   
GAAAACATCCATTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGTTATTATGAGTTTCTCCAAgtaagtgcctctttacatatattgtagcttaggattatgatgttcgtatctagtcgaattactctagttgtgctatgctagtgaaatgatatatataattattattataatttttgagcag

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G27460.3 (Glycine max), 5'ss of exon 8
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgta----ccagtttacac-tgcttcactttatttatttttctttcctatcatgacccctaagtattatattgaaatctac--gtcaaag----------------------------------
|| ||  ||  |||| |||||||| ||||| ||||| ||||| || |||||||||   ||||||||||||||||| ||||| ||||||||||| || || |||    ||  ||| ||  |  |  |  | |   || |    ||| ||||  |     | | | || | |||   | | |  || |||                                   
GAAAGCATCTGTTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGCTATTATGAGTTTCTCCAAgtaagtgcctcttttcatatattgtagctgaggaatatgatgttcatatctagttgaattactcttgttttgtgctatgctagtgaaatgatatatattattattattattatttttgagcag

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatc---atgacccctaagtattatattgaaatctacgtcaaag
|| |||  |  |  |  | ||||||||||| ||||| || |  || ||||||||| | ||||||||||||||||| |||||  | | ||| ||| |||| |||   | ||    |  ||    || | |||   | |    | |    || |   |||||    | |   | || |     |   
GAAAGAAACCGTGAGAGCTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCCTTGGCCACTTTGAATTCTTTCAAgtaagggatttttttcttttcggttctatatccatttaaagtgtttcaataattactaagctcgaaacaaatatttcttgtag--

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgacccctaagta--ttatattgaaatctacgtcaaag-------------------------
|| | || ||||||| || ||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||| |||| |||||||||||| |||    | | |      ||| ||     |  |||  ||  |||| |      |    |  ||  ||   |  || | |                              
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211350735|gb|FL044608.1|FL044608
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCA
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCA
EST: gi|211350729|gb|FL044602.1|FL044602
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGGACCTGGGTGCTGCCCCAA
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGG-ACCTGGGTGCTGCCCCAA
EST: gi|211350733|gb|FL044606.1|FL044606
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAAGGACCTGGGTGCTG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGA-GGACCTGGGTGCTG
EST: gi|211221447|gb|FL389601.1|FL389601
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211350724|gb|FL044597.1|FL044597
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGT
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGT
EST: gi|211350722|gb|FL044595.1|FL044595
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGN-CCTTGGGGTGCTGCCCCA-TCTGGGTATTCAACAATGGAA
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCT-GGG-TGCTGCCCCAATCTGGGTATTCAACAATGGAA
EST: gi|211350723|gb|FL044596.1|FL044596
EST:     GTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGGTCCTTCAG                         CTTGCGGAGGACCTGGG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGG
EST: gi|211353135|gb|FL044612.1|FL044612
EST:     TTTGGCATTACTGGACTGATGATGGGCTTAGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAA
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAA
EST: gi|21331549|gb|BQ486930.1|BQ486930
EST:     GTGGCATTACTGGACTGATGATGGGNC-TGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTGGCATTACTGGACTGATGATGGG-CTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32929408|gb|CF034220.1|CF034220
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211350730|gb|FL044603.1|FL044603
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGAC
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGAC
EST: gi|211353132|gb|FL044609.1|FL044609
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCC
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCC
EST: gi|32924613|gb|CF029425.1|CF029425
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|18963147|gb|BM660266.1|BM660266
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|18661865|gb|BM501621.1|BM501621
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211350725|gb|FL044598.1|FL044598
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32923839|gb|CF028651.1|CF028651
EST:     TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211350728|gb|FL044601.1|FL044601
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATNATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCC
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCC
EST: gi|211150003|gb|FL374637.1|FL374637
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211079656|gb|FL402147.1|FL402147
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAN                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|18654845|gb|BM499650.1|BM499650
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32929966|gb|CF034778.1|CF034778
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32924017|gb|CF028829.1|CF028829
EST:     TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32924051|gb|CF028863.1|CF028863
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32924183|gb|CF028995.1|CF028995
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|211350731|gb|FL044604.1|FL044604
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTA
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTA
EST: gi|211353136|gb|FL044613.1|FL044613
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATGG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATGG
EST: gi|32924623|gb|CF029435.1|CF029435
EST:     TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
EST: gi|32928349|gb|CF033161.1|CF033161
EST:     TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAG                         CTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG
genomic: TACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagttt ... tacgtcaaagCTTGCGGAGGACCTGGGTGCTGCCCCAATCTGGGTATTCAACAATG