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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAATCCCCTGATTCAACTCCTGTTATTCCAGTTACTATAGTAAATTGTGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgcttatgaactgattggaacatttgcagcactcttgatccatttaatctataagaattaagccttttggggggcatttaagtgaagtagggaacttttctttacgttttgaatgcccttctcatgcaataatggtcatacag

Basic information

species Zea mays
transcript GRMZM2G006107_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438633|gb|DR819683.1|DR819683
EST:     TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG                         ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: gi|94479119|gb|EB708077.1|EB708077
EST:     TGGAGAGCTCATTGAACGCATAGATATTGGCTCTATGTCAATAGAAATTG                         ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGAT
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGAT
EST: gi|211075041|gb|FL431329.1|FL431329
EST:     TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG                         ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: gi|211294918|gb|FL414861.1|FL414861
EST:     TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG                         ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: gi|211294917|gb|FL414860.1|FL414860
EST:     TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG                         ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCAATCCCCTGATTCAACTCCTGTTATTCCAGTTACTATAGTAAATTGTGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgcttatgaactgattggaacatttgcagcactcttgatccatttaatctataagaattaagccttttggggggcatttaagtgaagtagggaacttttctttacgttttgaatgcccttctcatgcaataatggtcatacag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG