1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACGGTGACCAGGAGCTTTCCAGCGCCTTCCAGAGTTTCGGAAGAGTAGTAAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatcttctcttatctttcaagctcgcacagcatggtagcttttttttttcctaatcgcgattcatatggcctggccctggctgcag
species | Zea mays |
transcript | GRMZM2G005459_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGCGCTAAGGTGTTCGTGGACAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTCGTGAGCTACGACTYTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|60337356|gb|DN204329.1|DN204329
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|37383165|gb|CF628572.1|CF628572
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: GGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|13178538|gb|BG349796.1|BG349796
genomic: GGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|60394696|gb|DN227566.1|DN227566
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|83278898|gb|DV942906.1|DV942906
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|148934647|gb|EC878698.2|EC878698
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGTTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|5713840|gb|AI943825.1|AI943825
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|13178260|gb|BG349518.1|BG349518
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|76011818|gb|DT938988.1|DT938988
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|211198530|gb|FL470721.1|FL470721
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTGGACAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTCGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGAEST: gi|149074525|gb|EE162923.2|EE162923
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
EST: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCG GTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
genomic: AAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatctt ... ctggctgcagGTTTTGTGAGCTACGACTCTCCTGCCTCCGCGCAGGCAGCCATCAACAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGTGACCAGGAGCTTTCCAGCGCCTTCCAGAGTTTCGGAAGAGTAGTAAGCGCTAAGGTGTTCGTAGATAAAGCAACGGGCGTGAGCAAATGCTTCGgtaagatcttctcttatctttcaagctcgcacagcatggtagcttttttttttcctaatcgcgattcatatggcctggccctggctgcag
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