1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAgtaagcactaacgtccctctttattccgactaggctgcttctcaaataacagccttttttttgttttgctttactaatcgtcctgccctttctctctaatttccccccttctcctttcgctgcttgcttgtggctgtgacag
species | Zea mays |
transcript | GRMZM2G003424_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATA GAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGNNNNNNNNEST: gi|71435849|gb|DR816899.1|DR816899
genomic: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAgtaagcacta ... gctgtgacagGAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGAAAAAAAA
EST: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATA GAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGNNNNNNNNEST: gi|31441063|gb|CD510494.1|CD510494
genomic: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAgtaagcacta ... gctgtgacagGAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGAAAAAAAA
EST: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATA GAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGNNNNNNNN
genomic: GGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAgtaagcacta ... gctgtgacagGAATACTAGAAGCCAAGGAAAAGTGATGTTGGATATATAGGAGAAAAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCAGCATTGGAAGCGAGTGATACCCCAGCCTAATCATAgtaagcactaacgtccctctttattccgactaggctgcttctcaaataacagccttttttttgttttgctttactaatcgtcctgccctttctctctaatttccccccttctcctttcgctgcttgcttgtggctgtgacag
- - - - - - - - - - - - - - - - - - - - - - TGGAAG